1 Response_reg#1
6-92 aa · 87 aa · 72.5% of protein
Raw token
Response_reg:6:6.69e-22:92:87:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
MR568_RS00295
Response regulator, CheY family
Eisenbergiella massiliensis · GCF_022781285
ClassRRTypeCheYLength120 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_022781285#MR568_RS00295Stable P2CS identifier used across views.
GenomeGCF_022781285Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Eisenbergiella
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length120 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage87 / 120 aa (72.5%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa120 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:6:6.69e-22:92:87:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_022781285::NZ_JALETP010000007.1::G00049
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span16401-17536Genomic interval covered by the local TCS group.
Identifiers
Old locus tagMR568_00300RefSeq proteinWP_154463481.1
Context group ID
GCF_022781285::NZ_JALETP010000007.1::G00049Context members
MR568_RS00290MR568_RS00295
Partner locus tags
MR568_RS00290MR568_RS00295
Partner old locus tags
MR568_00295MR568_00300
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_154463481.1Primary protein accession used for annex mappings.
UniProt accessionA0A6N7VWJ7Primary UniProt accession resolved in the annex database.
UniProt IDA0A6N7VWJ7_9FIRMDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagMR568_RS00295Primary locus identifier stored in the genes table.
Old locus tagMR568_00300Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JALETP010000007.1Sequence record reported by the local genomic context database.
Genomic interval17 174-17 536 nt363 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span16 401-17 536 ntGCF_022781285::NZ_JALETP010000007.1::G00049
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_022781285::NZ_JALETP010000007.1::G00049Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JALETP010000007.1All displayed genes belong to this local TCS context.
Neighborhood span16 401-17 536 nt1 136 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
16 401 nt17 536 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
MR568_RS00290GCF_022781285#MR568_RS00290
HKClassic
16 401-17 162 nt · Reverse (-)
MR568_RS00295GCF_022781285#MR568_RS00295
RRCheYCurrent focus
17 174-17 536 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_009696275#FYJ45_RS03315Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg1 domain in the representative PFAM annotation.
PFAM architecture for RROC_2439847
Simplified PFAM architecture for RROC_2439847
PFAM domain coverage: 87 / 120 aa (72.5%)
1 aa120 aa
Response_reg
- Simplified architecture: Response_reg
- Raw architecture: Response_reg[5-91]
- Domain count: 1
- Matched identifier: RROC_2439847
- Positioned domains: Response_reg 5-91 ; Response_reg 5-91
Cluster members and taxonomy
Representative gene: GCF_009696275#FYJ45_RS03315
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 720 294 · GCF_022781285
AssemblyASM2278128v1 · Contighaploid
Genome composition5 340 195 bp · 48,5% GCEisenbergiella massiliensis
Signal transduction countsGenes 161 · HK 74 · RR 79CheA 0 · PP 8
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusEisenbergiella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Eisenbergiella
Related genes
Preview from the same derived genome key