1 Response_reg#1
1-60 aa · 60 aa · 7.7% of protein
Raw token
Response_reg:1:0.0000000000000121:60:60:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
MR568_RS16355
Response regulator, RpfG family
Eisenbergiella massiliensis · GCF_022781285
ClassRRTypeRpfGLength778 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_022781285#MR568_RS16355Stable P2CS identifier used across views.
GenomeGCF_022781285Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Eisenbergiella
Domain signature
Compact overview inferred from the domain field
Response_regHDGGDEF
Protein length778 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage309 / 778 aa (39.7%)Merged over positioned domains only.
Domain description1 Response_reg,1 HD,1 GGDEFSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa778 aa
Domain-by-domain annotation3 items
2 HD#2
144-249 aa · 106 aa · 13.6% of protein
Raw token
HD:144:0.0000000000000759:249:106:1103 GGDEF#3
618-760 aa · 143 aa · 18.4% of protein
Raw token
GGDEF:618:6.47e-41:760:157:160- Raw architecture: Response_reg:1:0.0000000000000121:60:60:111#HD:144:0.0000000000000759:249:106:110#GGDEF:618:6.47e-41:760:157:160
- Domain description: 1 Response_reg,1 HD,1 GGDEF
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_022781285::NZ_JALETP010000226.1::G00011
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span9324-13781Genomic interval covered by the local TCS group.
Identifiers
Old locus tagMR568_16460RefSeq proteinWP_276916963.1
Context group ID
GCF_022781285::NZ_JALETP010000226.1::G00011Context members
MR568_RS16350MR568_RS16355
Partner locus tags
MR568_RS16350MR568_RS16355
Partner old locus tags
MR568_16455MR568_16460
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_276916963.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagMR568_RS16355Primary locus identifier stored in the genes table.
Old locus tagMR568_16460Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JALETP010000226.1Sequence record reported by the local genomic context database.
Genomic interval11 444-13 781 nt2 338 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span9 324-13 781 ntGCF_022781285::NZ_JALETP010000226.1::G00011
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_022781285::NZ_JALETP010000226.1::G00011Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JALETP010000226.1All displayed genes belong to this local TCS context.
Neighborhood span9 324-13 781 nt4 458 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
9 324 nt13 781 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
MR568_RS16350GCF_022781285#MR568_RS16350
HKHybrid
9 324-11 447 nt · Reverse (-)
MR568_RS16355GCF_022781285#MR568_RS16355
RRRpfGCurrent focus
11 444-13 781 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_034172685#SPF95_RS13935Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + HD_5 + GGDEF3 domains in the representative PFAM annotation.
PFAM architecture for RROC_0013936
Simplified PFAM architecture for RROC_0013936
PFAM domain coverage: 378 / 832 aa (45.4%)
1 aa832 aa
Response_regHD_5GGDEF
- Simplified architecture: Response_reg + HD_5 + GGDEF
- Raw architecture: Response_reg[10-115] | HD_5[194-322] | GGDEF[672-814]
- Domain count: 3
- Matched identifier: RROC_0013936
- Positioned domains: Response_reg 10-115 ; HD_5 194-322 ; GGDEF 672-814
Cluster members and taxonomy
Representative gene: GCF_034172685#SPF95_RS13935
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 720 294 · GCF_022781285
AssemblyASM2278128v1 · Contighaploid
Genome composition5 340 195 bp · 48,5% GCEisenbergiella massiliensis
Signal transduction countsGenes 161 · HK 74 · RR 79CheA 0 · PP 8
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusEisenbergiella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Eisenbergiella
Related genes
Preview from the same derived genome key