1 Response_reg#1
10-114 aa · 105 aa · 12.6% of protein
Raw token
Response_reg:10:2.44e-26:114:106:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
SPF95_RS13935
Response regulator, RpfG family
Eisenbergiella porci · GCF_034172685
ClassRRTypeRpfGLength832 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_034172685#SPF95_RS13935Stable P2CS identifier used across views.
GenomeGCF_034172685Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Eisenbergiella
Domain signature
Compact overview inferred from the domain field
Response_regHDGGDEF
Protein length832 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage354 / 832 aa (42.5%)Merged over positioned domains only.
Domain description1 Response_reg,1 HD,1 GGDEFSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa832 aa
Domain-by-domain annotation3 items
2 HD#2
198-303 aa · 106 aa · 12.7% of protein
Raw token
HD:198:0.00000000000013:303:106:1103 GGDEF#3
672-814 aa · 143 aa · 17.2% of protein
Raw token
GGDEF:672:9.9e-41:814:157:160- Raw architecture: Response_reg:10:2.44e-26:114:106:111#HD:198:0.00000000000013:303:106:110#GGDEF:672:9.9e-41:814:157:160
- Domain description: 1 Response_reg,1 HD,1 GGDEF
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_034172685::NZ_JAXFEN010000072.1::G00016
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span350-4968Genomic interval covered by the local TCS group.
Identifiers
Old locus tagSPF95_13935RefSeq proteinWP_321085205.1
Context group ID
GCF_034172685::NZ_JAXFEN010000072.1::G00016Context members
SPF95_RS13935SPF95_RS13940
Partner locus tags
SPF95_RS13935SPF95_RS13940
Partner old locus tags
SPF95_13935SPF95_13940
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_321085205.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagSPF95_RS13935Primary locus identifier stored in the genes table.
Old locus tagSPF95_13935Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAXFEN010000072.1Sequence record reported by the local genomic context database.
Genomic interval350-2 848 nt2 499 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span350-4 968 ntGCF_034172685::NZ_JAXFEN010000072.1::G00016
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_034172685::NZ_JAXFEN010000072.1::G00016Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAXFEN010000072.1All displayed genes belong to this local TCS context.
Neighborhood span350-4 968 nt4 619 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
350 nt4 968 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
SPF95_RS13935GCF_034172685#SPF95_RS13935
RRRpfGCurrent focus
350-2 848 nt · Forward (+)
SPF95_RS13940GCF_034172685#SPF95_RS13940
HKHybrid
2 845-4 968 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_034172685#SPF95_RS13935The current gene is the representative for this cluster.
PFAM architectureResponse_reg + HD_5 + GGDEF3 domains in the representative PFAM annotation.
PFAM architecture for RROC_0013936
Simplified PFAM architecture for RROC_0013936
PFAM domain coverage: 378 / 832 aa (45.4%)
1 aa832 aa
Response_regHD_5GGDEF
- Simplified architecture: Response_reg + HD_5 + GGDEF
- Raw architecture: Response_reg[10-115] | HD_5[194-322] | GGDEF[672-814]
- Domain count: 3
- Matched identifier: RROC_0013936
- Positioned domains: Response_reg 10-115 ; HD_5 194-322 ; GGDEF 672-814
Cluster members and taxonomy
Representative gene: GCF_034172685#SPF95_RS13935
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 652 274 · GCF_034172685
AssemblyASM3417268v1 · Contighaploid
Genome composition5 269 973 bp · 48,5% GCEisenbergiella porci
Signal transduction countsGenes 159 · HK 75 · RR 77CheA 0 · PP 7
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusEisenbergiella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Eisenbergiella
Related genes
Preview from the same derived genome key