1 Response_reg#1
7-116 aa · 110 aa · 45.6% of protein
Raw token
Response_reg:7:9.16e-30:116:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
MR568_RS12320
Response regulator OmpR family
Eisenbergiella massiliensis · GCF_022781285
ClassRRTypeOmpRLength241 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_022781285#MR568_RS12320Stable P2CS identifier used across views.
GenomeGCF_022781285Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Eisenbergiella
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length241 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 241 aa (77.6%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa241 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
154-230 aa · 77 aa · 32.0% of protein
Raw token
Trans_reg_C:154:2.16e-26:230:77:77- Raw architecture: Response_reg:7:9.16e-30:116:111:111#Trans_reg_C:154:2.16e-26:230:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_022781285::NZ_JALETP010000171.1::G00080
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span11989-13887Genomic interval covered by the local TCS group.
Identifiers
Old locus tagMR568_12415RefSeq proteinWP_276915686.1
Context group ID
GCF_022781285::NZ_JALETP010000171.1::G00080Context members
MR568_RS12315MR568_RS12320
Partner locus tags
MR568_RS12315MR568_RS12320
Partner old locus tags
MR568_12410MR568_12415
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_276915686.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagMR568_RS12320Primary locus identifier stored in the genes table.
Old locus tagMR568_12415Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JALETP010000171.1Sequence record reported by the local genomic context database.
Genomic interval13 162-13 887 nt726 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span11 989-13 887 ntGCF_022781285::NZ_JALETP010000171.1::G00080
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_022781285::NZ_JALETP010000171.1::G00080Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JALETP010000171.1All displayed genes belong to this local TCS context.
Neighborhood span11 989-13 887 nt1 899 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
11 989 nt13 887 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
MR568_RS12315GCF_022781285#MR568_RS12315
HKClassic
11 989-13 110 nt · Forward (+)
MR568_RS12320GCF_022781285#MR568_RS12320
RROmpRCurrent focus
13 162-13 887 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_022781285#MR568_RS12320The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0873180
Simplified PFAM architecture for RROC_0873180
PFAM domain coverage: 187 / 241 aa (77.6%)
1 aa241 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[7-116] | Trans_reg_C[154-230]
- Domain count: 2
- Matched identifier: RROC_0873180
- Positioned domains: Response_reg 7-116 ; Trans_reg_C 154-230
Cluster members and taxonomy
Representative gene: GCF_022781285#MR568_RS12320
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 720 294 · GCF_022781285
AssemblyASM2278128v1 · Contighaploid
Genome composition5 340 195 bp · 48,5% GCEisenbergiella massiliensis
Signal transduction countsGenes 161 · HK 74 · RR 79CheA 0 · PP 8
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusEisenbergiella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Eisenbergiella
Related genes
Preview from the same derived genome key