1 Response_reg#1
5-115 aa · 111 aa · 21.6% of protein
Raw token
Response_reg:5:1.21e-30:115:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
MR568_RS11830
Response regulator, unclassified
Eisenbergiella massiliensis · GCF_022781285
ClassRRTypeunclassifiedLength513 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_022781285#MR568_RS11830Stable P2CS identifier used across views.
GenomeGCF_022781285Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Eisenbergiella
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length513 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage190 / 513 aa (37.0%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa513 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
418-458 aa · 41 aa · 8.0% of protein
Raw token
HTH_AraC:418:0.0000124:458:41:423 HTH_AraC#3
471-508 aa · 38 aa · 7.4% of protein
Raw token
HTH_AraC:471:0.0000000209:508:38:42- Raw architecture: Response_reg:5:1.21e-30:115:111:111#HTH_AraC:418:0.0000124:458:41:42#HTH_AraC:471:0.0000000209:508:38:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_022781285::NZ_JALETP010000169.1::G00089
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span9632-11173Genomic interval covered by the local TCS group.
Identifiers
Old locus tagMR568_11920RefSeq proteinWP_276915548.1
Context group ID
GCF_022781285::NZ_JALETP010000169.1::G00089Context members
MR568_RS11830
Partner locus tags
MR568_RS11830
Partner old locus tags
MR568_11920
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_276915548.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagMR568_RS11830Primary locus identifier stored in the genes table.
Old locus tagMR568_11920Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JALETP010000169.1Sequence record reported by the local genomic context database.
Genomic interval9 632-11 173 nt1 542 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span9 632-11 173 ntGCF_022781285::NZ_JALETP010000169.1::G00089
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_022781285::NZ_JALETP010000169.1::G00089Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JALETP010000169.1All displayed genes belong to this local TCS context.
Neighborhood span9 632-11 173 nt1 542 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
9 632 nt11 173 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
MR568_RS11830GCF_022781285#MR568_RS11830
RRunclassifiedCurrent focus
9 632-11 173 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_022781285#MR568_RS11830The current gene is the representative for this cluster.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0142205
Simplified PFAM architecture for RROC_0142205
PFAM domain coverage: 190 / 513 aa (37.0%)
1 aa513 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[5-116] | HTH_18[431-508]
- Domain count: 2
- Matched identifier: RROC_0142205
- Positioned domains: Response_reg 5-116 ; HTH_18 431-508
Cluster members and taxonomy
Representative gene: GCF_022781285#MR568_RS11830
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 720 294 · GCF_022781285
AssemblyASM2278128v1 · Contighaploid
Genome composition5 340 195 bp · 48,5% GCEisenbergiella massiliensis
Signal transduction countsGenes 161 · HK 74 · RR 79CheA 0 · PP 8
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusEisenbergiella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Eisenbergiella
Related genes
Preview from the same derived genome key