1 HAMP#1
45-114 aa · 70 aa · 19.6% of protein
Raw token
HAMP:45:0.00000000000000121:114:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
MR568_RS06355
Histidine kinase, Classic
Eisenbergiella massiliensis · GCF_022781285
ClassHKTypeClassicLength358 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_022781285#MR568_RS06355Stable P2CS identifier used across views.
GenomeGCF_022781285Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Eisenbergiella
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length358 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage242 / 358 aa (67.6%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa358 aa
Domain-by-domain annotation3 items
2 HisKA#2
139-204 aa · 66 aa · 18.4% of protein
Raw token
HisKA:139:2.26e-17:204:66:643 HATPase_c#3
250-355 aa · 106 aa · 29.6% of protein
Raw token
HATPase_c:250:3.01e-16:355:107:109- Raw architecture: HAMP:45:0.00000000000000121:114:70:69#HisKA:139:2.26e-17:204:66:64#HATPase_c:250:3.01e-16:355:107:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_022781285::NZ_JALETP010000082.1::G00088
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span8095-9171Genomic interval covered by the local TCS group.
Identifiers
Old locus tagMR568_06410RefSeq proteinWP_276914153.1
Context group ID
GCF_022781285::NZ_JALETP010000082.1::G00088Context members
MR568_RS06355
Partner locus tags
MR568_RS06355
Partner old locus tags
MR568_06410
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_276914153.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagMR568_RS06355Primary locus identifier stored in the genes table.
Old locus tagMR568_06410Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JALETP010000082.1Sequence record reported by the local genomic context database.
Genomic interval8 095-9 171 nt1 077 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span8 095-9 171 ntGCF_022781285::NZ_JALETP010000082.1::G00088
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_022781285::NZ_JALETP010000082.1::G00088Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JALETP010000082.1All displayed genes belong to this local TCS context.
Neighborhood span8 095-9 171 nt1 077 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
8 095 nt9 171 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
MR568_RS06355GCF_022781285#MR568_RS06355
HKClassicCurrent focus
8 095-9 171 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_022781285#MR568_RS06355The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2762107
Simplified PFAM architecture for HKOC_2762107
PFAM domain coverage: 224 / 358 aa (62.6%)
1 aa358 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[62-114] | HisKA[140-204] | HATPase_c[251-356]
- Domain count: 3
- Matched identifier: HKOC_2762107
- Positioned domains: HAMP 62-114 ; HisKA 140-204 ; HATPase_c 251-356
Cluster members and taxonomy
Representative gene: GCF_022781285#MR568_RS06355
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 720 294 · GCF_022781285
AssemblyASM2278128v1 · Contighaploid
Genome composition5 340 195 bp · 48,5% GCEisenbergiella massiliensis
Signal transduction countsGenes 161 · HK 74 · RR 79CheA 0 · PP 8
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusEisenbergiella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Eisenbergiella
Related genes
Preview from the same derived genome key