1 HAMP#1
24-96 aa · 73 aa · 22.7% of protein
Raw token
HAMP:24:0.0000000615:96:73:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
MR568_RS00965
Histidine kinase, Classic
Eisenbergiella massiliensis · GCF_022781285
ClassHKTypeClassicLength322 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_022781285#MR568_RS00965Stable P2CS identifier used across views.
GenomeGCF_022781285Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Eisenbergiella
Domain signature
Compact overview inferred from the domain field
HAMPHis_kinaseHATPase_c
Protein length322 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage260 / 322 aa (80.7%)Merged over positioned domains only.
Domain description1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa322 aa
Domain-by-domain annotation3 items
2 His_kinase#2
111-189 aa · 79 aa · 24.5% of protein
Raw token
His_kinase:111:1.14e-25:189:80:803 HATPase_c#3
208-315 aa · 108 aa · 33.5% of protein
Raw token
HATPase_c:208:0.00000000181:315:108:109- Raw architecture: HAMP:24:0.0000000615:96:73:69#His_kinase:111:1.14e-25:189:80:80#HATPase_c:208:0.00000000181:315:108:109
- Domain description: 1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_022781285::NZ_JALETP010000015.1::G00041
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span2829-5302Genomic interval covered by the local TCS group.
Identifiers
Old locus tagMR568_00970RefSeq proteinWP_276912906.1
Context group ID
GCF_022781285::NZ_JALETP010000015.1::G00041Context members
MR568_RS00960MR568_RS00965
Partner locus tags
MR568_RS00960MR568_RS00965
Partner old locus tags
MR568_00965MR568_00970
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_276912906.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagMR568_RS00965Primary locus identifier stored in the genes table.
Old locus tagMR568_00970Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JALETP010000015.1Sequence record reported by the local genomic context database.
Genomic interval4 334-5 302 nt969 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span2 829-5 302 ntGCF_022781285::NZ_JALETP010000015.1::G00041
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_022781285::NZ_JALETP010000015.1::G00041Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JALETP010000015.1All displayed genes belong to this local TCS context.
Neighborhood span2 829-5 302 nt2 474 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 829 nt5 302 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
MR568_RS00960GCF_022781285#MR568_RS00960
RRunclassified
2 829-4 292 nt · Reverse (-)
MR568_RS00965GCF_022781285#MR568_RS00965
HKClassicCurrent focus
4 334-5 302 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_022781285#MR568_RS00965The current gene is the representative for this cluster.
PFAM architectureHis_kinase + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2867314
Simplified PFAM architecture for HKOC_2867314
PFAM domain coverage: 182 / 322 aa (56.5%)
1 aa322 aa
His_kinaseHATPase_c
- Simplified architecture: His_kinase + HATPase_c
- Raw architecture: His_kinase[111-189] | HATPase_c[208-310]
- Domain count: 2
- Matched identifier: HKOC_2867314
- Positioned domains: His_kinase 111-189 ; HATPase_c 208-310
Cluster members and taxonomy
Representative gene: GCF_022781285#MR568_RS00965
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 720 294 · GCF_022781285
AssemblyASM2278128v1 · Contighaploid
Genome composition5 340 195 bp · 48,5% GCEisenbergiella massiliensis
Signal transduction countsGenes 161 · HK 74 · RR 79CheA 0 · PP 8
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusEisenbergiella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Eisenbergiella
Related genes
Preview from the same derived genome key