1 Response_reg#1
3-116 aa · 114 aa · 26.8% of protein
Raw token
Response_reg:3:4.22e-26:116:114:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
MR568_RS01070
Response regulator, unclassified
Eisenbergiella massiliensis · GCF_022781285
ClassRRTypeunclassifiedLength426 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_022781285#MR568_RS01070Stable P2CS identifier used across views.
GenomeGCF_022781285Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Eisenbergiella
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length426 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage188 / 426 aa (44.1%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa426 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
330-371 aa · 42 aa · 9.9% of protein
Raw token
HTH_AraC:330:0.00000206:371:42:423 HTH_AraC#3
388-419 aa · 32 aa · 7.5% of protein
Raw token
HTH_AraC:388:0.00000192:419:32:42- Raw architecture: Response_reg:3:4.22e-26:116:114:111#HTH_AraC:330:0.00000206:371:42:42#HTH_AraC:388:0.00000192:419:32:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_022781285::NZ_JALETP010000018.1::G00012
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span3852-6775Genomic interval covered by the local TCS group.
Identifiers
Old locus tagMR568_01075RefSeq proteinWP_025491225.1
Context group ID
GCF_022781285::NZ_JALETP010000018.1::G00012Context members
MR568_RS01070MR568_RS01075
Partner locus tags
MR568_RS01070MR568_RS01075
Partner old locus tags
MR568_01075MR568_01080
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_025491225.1Primary protein accession used for annex mappings.
UniProt accessionA0A3E3IUW3Primary UniProt accession resolved in the annex database.
UniProt IDA0A3E3IUW3_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagMR568_RS01070Primary locus identifier stored in the genes table.
Old locus tagMR568_01075Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JALETP010000018.1Sequence record reported by the local genomic context database.
Genomic interval3 852-5 132 nt1 281 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span3 852-6 775 ntGCF_022781285::NZ_JALETP010000018.1::G00012
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_022781285::NZ_JALETP010000018.1::G00012Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JALETP010000018.1All displayed genes belong to this local TCS context.
Neighborhood span3 852-6 775 nt2 924 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
3 852 nt6 775 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
MR568_RS01070GCF_022781285#MR568_RS01070
RRunclassifiedCurrent focus
3 852-5 132 nt · Reverse (-)
MR568_RS01075GCF_022781285#MR568_RS01075
HKClassic
5 129-6 775 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003435265#DWY69_RS15150Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0349762
Simplified PFAM architecture for RROC_0349762
PFAM domain coverage: 190 / 426 aa (44.6%)
1 aa426 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[3-115] | HTH_18[345-421]
- Domain count: 2
- Matched identifier: RROC_0349762
- Positioned domains: Response_reg 3-115 ; Response_reg 3-115 ; HTH_18 345-421 ; HTH_18 345-421
Cluster members and taxonomy
Representative gene: GCF_003435265#DWY69_RS15150
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 720 294 · GCF_022781285
AssemblyASM2278128v1 · Contighaploid
Genome composition5 340 195 bp · 48,5% GCEisenbergiella massiliensis
Signal transduction countsGenes 161 · HK 74 · RR 79CheA 0 · PP 8
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusEisenbergiella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Eisenbergiella
Related genes
Preview from the same derived genome key