1 Response_reg#1
6-115 aa · 110 aa · 20.5% of protein
Raw token
Response_reg:6:5.5e-30:115:110:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
MR568_RS00695
Response regulator, unclassified
Eisenbergiella massiliensis · GCF_022781285
ClassRRTypeunclassifiedLength536 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_022781285#MR568_RS00695Stable P2CS identifier used across views.
GenomeGCF_022781285Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Eisenbergiella
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length536 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage180 / 536 aa (33.6%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa536 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
439-479 aa · 41 aa · 7.6% of protein
Raw token
HTH_AraC:439:0.00000158:479:41:423 HTH_AraC#3
500-528 aa · 29 aa · 5.4% of protein
Raw token
HTH_AraC:500:0.00000045:528:29:42- Raw architecture: Response_reg:6:5.5e-30:115:110:111#HTH_AraC:439:0.00000158:479:41:42#HTH_AraC:500:0.00000045:528:29:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_022781285::NZ_JALETP010000011.1::G00031
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span24418-28039Genomic interval covered by the local TCS group.
Identifiers
Old locus tagMR568_00705RefSeq proteinWP_276912826.1
Context group ID
GCF_022781285::NZ_JALETP010000011.1::G00031Context members
MR568_RS00695MR568_RS00700
Partner locus tags
MR568_RS00695MR568_RS00700
Partner old locus tags
MR568_00705MR568_00710
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_276912826.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagMR568_RS00695Primary locus identifier stored in the genes table.
Old locus tagMR568_00705Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JALETP010000011.1Sequence record reported by the local genomic context database.
Genomic interval24 418-26 028 nt1 611 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span24 418-28 039 ntGCF_022781285::NZ_JALETP010000011.1::G00031
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_022781285::NZ_JALETP010000011.1::G00031Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JALETP010000011.1All displayed genes belong to this local TCS context.
Neighborhood span24 418-28 039 nt3 622 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
24 418 nt28 039 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
MR568_RS00695GCF_022781285#MR568_RS00695
RRunclassifiedCurrent focus
24 418-26 028 nt · Forward (+)
MR568_RS00700GCF_022781285#MR568_RS00700
HKClassic
26 018-28 039 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_022781285#MR568_RS00695The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GGDEF_2 + HTH_183 domains in the representative PFAM annotation.
PFAM architecture for RROC_0099456
Simplified PFAM architecture for RROC_0099456
PFAM domain coverage: 322 / 536 aa (60.1%)
1 aa536 aa
Response_regGGDEF_2HTH_18
- Simplified architecture: Response_reg + GGDEF_2 + HTH_18
- Raw architecture: Response_reg[6-117] | GGDEF_2[160-291] | HTH_18[451-528]
- Domain count: 3
- Matched identifier: RROC_0099456
- Positioned domains: Response_reg 6-117 ; GGDEF_2 160-291 ; HTH_18 451-528
Cluster members and taxonomy
Representative gene: GCF_022781285#MR568_RS00695
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 720 294 · GCF_022781285
AssemblyASM2278128v1 · Contighaploid
Genome composition5 340 195 bp · 48,5% GCEisenbergiella massiliensis
Signal transduction countsGenes 161 · HK 74 · RR 79CheA 0 · PP 8
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusEisenbergiella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Eisenbergiella
Related genes
Preview from the same derived genome key