1 His_kinase#1
44-122 aa · 79 aa · 31.2% of protein
Raw token
His_kinase:44:2.49e-30:122:80:80P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
MR568_RS00290
Histidine kinase, Classic
Eisenbergiella massiliensis · GCF_022781285
ClassHKTypeClassicLength253 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_022781285#MR568_RS00290Stable P2CS identifier used across views.
GenomeGCF_022781285Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Eisenbergiella
Domain signature
Compact overview inferred from the domain field
His_kinaseHATPase_c
Protein length253 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage190 / 253 aa (75.1%)Merged over positioned domains only.
Domain description1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa253 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
138-248 aa · 111 aa · 43.9% of protein
Raw token
HATPase_c:138:0.000000000000149:248:112:109- Raw architecture: His_kinase:44:2.49e-30:122:80:80#HATPase_c:138:0.000000000000149:248:112:109
- Domain description: 1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_022781285::NZ_JALETP010000007.1::G00049
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span16401-17536Genomic interval covered by the local TCS group.
Identifiers
Old locus tagMR568_00295RefSeq proteinWP_276912738.1
Context group ID
GCF_022781285::NZ_JALETP010000007.1::G00049Context members
MR568_RS00290MR568_RS00295
Partner locus tags
MR568_RS00290MR568_RS00295
Partner old locus tags
MR568_00295MR568_00300
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_276912738.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagMR568_RS00290Primary locus identifier stored in the genes table.
Old locus tagMR568_00295Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JALETP010000007.1Sequence record reported by the local genomic context database.
Genomic interval16 401-17 162 nt762 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span16 401-17 536 ntGCF_022781285::NZ_JALETP010000007.1::G00049
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_022781285::NZ_JALETP010000007.1::G00049Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JALETP010000007.1All displayed genes belong to this local TCS context.
Neighborhood span16 401-17 536 nt1 136 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
16 401 nt17 536 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
MR568_RS00290GCF_022781285#MR568_RS00290
HKClassicCurrent focus
16 401-17 162 nt · Reverse (-)
MR568_RS00295GCF_022781285#MR568_RS00295
RRCheY
17 174-17 536 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_022781285#MR568_RS00290The current gene is the representative for this cluster.
PFAM architectureHis_kinase + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2918035
Simplified PFAM architecture for HKOC_2918035
PFAM domain coverage: 186 / 253 aa (73.5%)
1 aa253 aa
His_kinaseHATPase_c
- Simplified architecture: His_kinase + HATPase_c
- Raw architecture: His_kinase[45-122] | HATPase_c[139-246]
- Domain count: 2
- Matched identifier: HKOC_2918035
- Positioned domains: His_kinase 45-122 ; HATPase_c 139-246
Cluster members and taxonomy
Representative gene: GCF_022781285#MR568_RS00290
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 720 294 · GCF_022781285
AssemblyASM2278128v1 · Contighaploid
Genome composition5 340 195 bp · 48,5% GCEisenbergiella massiliensis
Signal transduction countsGenes 161 · HK 74 · RR 79CheA 0 · PP 8
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusEisenbergiella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Eisenbergiella
Related genes
Preview from the same derived genome key