1 HAMP#1
286-357 aa · 72 aa · 12.4% of protein
Raw token
HAMP:286:0.00000000698:357:72:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LIZ56_RS06595
Histidine kinase, Classic
Agathobacter rectalis · GCF_020557395
ClassHKTypeClassicLength581 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_020557395#LIZ56_RS06595Stable P2CS identifier used across views.
GenomeGCF_020557395Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Agathobacter
Domain signature
Compact overview inferred from the domain field
HAMPHis_kinaseHATPase_c
Protein length581 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage255 / 581 aa (43.9%)Merged over positioned domains only.
Domain description1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa581 aa
Domain-by-domain annotation3 items
2 His_kinase#2
376-454 aa · 79 aa · 13.6% of protein
Raw token
His_kinase:376:2.36e-31:454:80:803 HATPase_c#3
471-574 aa · 104 aa · 17.9% of protein
Raw token
HATPase_c:471:0.00000000000000169:574:112:109- Raw architecture: HAMP:286:0.00000000698:357:72:69#His_kinase:376:2.36e-31:454:80:80#HATPase_c:471:0.00000000000000169:574:112:109
- Domain description: 1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_020557395::NZ_JAJCJK010000007.1::G00050
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span122809-126049Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLIZ56_06585RefSeq proteinWP_070104276.1
Context group ID
GCF_020557395::NZ_JAJCJK010000007.1::G00050Context members
LIZ56_RS06590LIZ56_RS06595
Partner locus tags
LIZ56_RS06590LIZ56_RS06595
Partner old locus tags
LIZ56_06580LIZ56_06585
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_070104276.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLIZ56_RS06595Primary locus identifier stored in the genes table.
Old locus tagLIZ56_06585Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAJCJK010000007.1Sequence record reported by the local genomic context database.
Genomic interval124 304-126 049 nt1 746 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span122 809-126 049 ntGCF_020557395::NZ_JAJCJK010000007.1::G00050
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020557395::NZ_JAJCJK010000007.1::G00050Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJCJK010000007.1All displayed genes belong to this local TCS context.
Neighborhood span122 809-126 049 nt3 241 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
122 809 nt126 049 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
LIZ56_RS06590GCF_020557395#LIZ56_RS06590
RRunclassified
122 809-124 311 nt · Reverse (-)
LIZ56_RS06595GCF_020557395#LIZ56_RS06595
HKClassicCurrent focus
124 304-126 049 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000209955#ERE_RS04610Use this link to inspect the representative gene detail.
PFAM architectureHAMP + His_kinase + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1114829
Simplified PFAM architecture for HKOC_1114829
PFAM domain coverage: 230 / 589 aa (39.0%)
1 aa589 aa
HAMPHis_kinaseHATPase_c
- Simplified architecture: HAMP + His_kinase + HATPase_c
- Raw architecture: HAMP[318-366] | His_kinase[385-462] | HATPase_c[479-581]
- Domain count: 3
- Matched identifier: HKOC_1114829
- Positioned domains: HAMP 318-366 ; His_kinase 385-462 ; HATPase_c 479-581
Cluster members and taxonomy
Representative gene: GCF_000209955#ERE_RS04610
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 491 · GCF_020557395
AssemblyASM2055739v1 · Contighaploid
Genome composition3 324 734 bp · 41,0% GCAgathobacter rectalis
Signal transduction countsGenes 90 · HK 36 · RR 51CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAgathobacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Agathobacter
Related genes
Preview from the same derived genome key