1 Response_reg#1
4-107 aa · 104 aa · 43.2% of protein
Raw token
Response_reg:4:8.95e-18:107:106:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LIZ56_RS00220
Response regulator LytTR family
Agathobacter rectalis · GCF_020557395
ClassRRTypeLytTRLength241 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_020557395#LIZ56_RS00220Stable P2CS identifier used across views.
GenomeGCF_020557395Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Agathobacter
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length241 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage194 / 241 aa (80.5%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa241 aa
Domain-by-domain annotation2 items
2 LytTR#2
145-234 aa · 90 aa · 37.3% of protein
Raw token
LytTR:145:1.31e-17:234:95:98- Raw architecture: Response_reg:4:8.95e-18:107:106:111#LytTR:145:1.31e-17:234:95:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_020557395::NZ_JAJCJK010000001.1::G00001
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span56458-57183Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLIZ56_00225RefSeq proteinWP_015516490.1
Context group ID
GCF_020557395::NZ_JAJCJK010000001.1::G00001Context members
LIZ56_RS00220
Partner locus tags
LIZ56_RS00220
Partner old locus tags
LIZ56_00225
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_015516490.1Primary protein accession used for annex mappings.
UniProt accessionA0AAW4UF90Primary UniProt accession resolved in the annex database.
UniProt IDA0AAW4UF90_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLIZ56_RS00220Primary locus identifier stored in the genes table.
Old locus tagLIZ56_00225Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAJCJK010000001.1Sequence record reported by the local genomic context database.
Genomic interval56 458-57 183 nt726 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span56 458-57 183 ntGCF_020557395::NZ_JAJCJK010000001.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020557395::NZ_JAJCJK010000001.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJCJK010000001.1All displayed genes belong to this local TCS context.
Neighborhood span56 458-57 183 nt726 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
56 458 nt57 183 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
LIZ56_RS00220GCF_020557395#LIZ56_RS00220
RRLytTRCurrent focus
56 458-57 183 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000209935#EUR_RS07280Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0862962
Simplified PFAM architecture for RROC_0862962
PFAM domain coverage: 195 / 241 aa (80.9%)
1 aa241 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[4-109] | LytTR[145-233]
- Domain count: 2
- Matched identifier: RROC_0862962
- Positioned domains: Response_reg 4-109 ; Response_reg 4-109 ; LytTR 145-233 ; LytTR 145-233
Cluster members and taxonomy
Representative gene: GCF_000209935#EUR_RS07280
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 491 · GCF_020557395
AssemblyASM2055739v1 · Contighaploid
Genome composition3 324 734 bp · 41,0% GCAgathobacter rectalis
Signal transduction countsGenes 90 · HK 36 · RR 51CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAgathobacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Agathobacter
Related genes
Preview from the same derived genome key