1 Response_reg#1
4-113 aa · 110 aa · 50.0% of protein
Raw token
Response_reg:4:4.2e-32:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LIZ56_RS00910
Response regulator OmpR family
Agathobacter rectalis · GCF_020557395
ClassRRTypeOmpRLength220 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_020557395#LIZ56_RS00910Stable P2CS identifier used across views.
GenomeGCF_020557395Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Agathobacter
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length220 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage183 / 220 aa (83.2%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa220 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
144-216 aa · 73 aa · 33.2% of protein
Raw token
Trans_reg_C:144:5.49e-26:216:77:77- Raw architecture: Response_reg:4:4.2e-32:113:111:111#Trans_reg_C:144:5.49e-26:216:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_020557395::NZ_JAJCJK010000001.1::G00004
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span196782-198871Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLIZ56_00915RefSeq proteinWP_015569484.1
Context group ID
GCF_020557395::NZ_JAJCJK010000001.1::G00004Context members
LIZ56_RS00905LIZ56_RS00910
Partner locus tags
LIZ56_RS00905LIZ56_RS00910
Partner old locus tags
LIZ56_00910LIZ56_00915
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_015569484.1Primary protein accession used for annex mappings.
UniProt accessionA0A395ZKB0Primary UniProt accession resolved in the annex database.
UniProt IDA0A395ZKB0_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 2Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLIZ56_RS00910Primary locus identifier stored in the genes table.
Old locus tagLIZ56_00915Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAJCJK010000001.1Sequence record reported by the local genomic context database.
Genomic interval198 209-198 871 nt663 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span196 782-198 871 ntGCF_020557395::NZ_JAJCJK010000001.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020557395::NZ_JAJCJK010000001.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJCJK010000001.1All displayed genes belong to this local TCS context.
Neighborhood span196 782-198 871 nt2 090 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
196 782 nt198 871 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
LIZ56_RS00905GCF_020557395#LIZ56_RS00905
HKClassic
196 782-198 212 nt · Reverse (-)
LIZ56_RS00910GCF_020557395#LIZ56_RS00910
RROmpRCurrent focus
198 209-198 871 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000209955#ERE_RS15375Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1723297
Simplified PFAM architecture for RROC_1723297
PFAM domain coverage: 183 / 220 aa (83.2%)
1 aa220 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-113] | Trans_reg_C[144-216]
- Domain count: 2
- Matched identifier: RROC_1723297
- Positioned domains: Response_reg 4-113 ; Response_reg 4-113 ; Trans_reg_C 144-216 ; Trans_reg_C 144-216
Cluster members and taxonomy
Representative gene: GCF_000209955#ERE_RS15375
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 491 · GCF_020557395
AssemblyASM2055739v1 · Contighaploid
Genome composition3 324 734 bp · 41,0% GCAgathobacter rectalis
Signal transduction countsGenes 90 · HK 36 · RR 51CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAgathobacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Agathobacter
Related genes
Preview from the same derived genome key