1 HAMP#1
175-241 aa · 67 aa · 14.1% of protein
Raw token
HAMP:175:6.19e-16:241:67:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LIZ56_RS00905
Histidine kinase, Classic
Agathobacter rectalis · GCF_020557395
ClassHKTypeClassicLength476 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_020557395#LIZ56_RS00905Stable P2CS identifier used across views.
GenomeGCF_020557395Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Agathobacter
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length476 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage236 / 476 aa (49.6%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa476 aa
Domain-by-domain annotation3 items
2 HisKA#2
253-313 aa · 61 aa · 12.8% of protein
Raw token
HisKA:253:0.00000000118:313:61:643 HATPase_c#3
364-471 aa · 108 aa · 22.7% of protein
Raw token
HATPase_c:364:6.84e-28:471:109:109- Raw architecture: HAMP:175:6.19e-16:241:67:69#HisKA:253:0.00000000118:313:61:64#HATPase_c:364:6.84e-28:471:109:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_020557395::NZ_JAJCJK010000001.1::G00004
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span196782-198871Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLIZ56_00910RefSeq proteinWP_306780401.1
Context group ID
GCF_020557395::NZ_JAJCJK010000001.1::G00004Context members
LIZ56_RS00905LIZ56_RS00910
Partner locus tags
LIZ56_RS00905LIZ56_RS00910
Partner old locus tags
LIZ56_00910LIZ56_00915
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_306780401.1Primary protein accession used for annex mappings.
UniProt accessionA0AAW4U5C7Primary UniProt accession resolved in the annex database.
UniProt IDA0AAW4U5C7_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLIZ56_RS00905Primary locus identifier stored in the genes table.
Old locus tagLIZ56_00910Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAJCJK010000001.1Sequence record reported by the local genomic context database.
Genomic interval196 782-198 212 nt1 431 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span196 782-198 871 ntGCF_020557395::NZ_JAJCJK010000001.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020557395::NZ_JAJCJK010000001.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJCJK010000001.1All displayed genes belong to this local TCS context.
Neighborhood span196 782-198 871 nt2 090 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
196 782 nt198 871 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
LIZ56_RS00905GCF_020557395#LIZ56_RS00905
HKClassicCurrent focus
196 782-198 212 nt · Reverse (-)
LIZ56_RS00910GCF_020557395#LIZ56_RS00910
RROmpR
198 209-198 871 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_020557395#LIZ56_RS00905The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1659619
Simplified PFAM architecture for HKOC_1659619
PFAM domain coverage: 218 / 476 aa (45.8%)
1 aa476 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[191-241] | HisKA[254-314] | HATPase_c[365-470]
- Domain count: 3
- Matched identifier: HKOC_1659619
- Positioned domains: HAMP 191-241 ; HisKA 254-314 ; HATPase_c 365-470
Cluster members and taxonomy
Representative gene: GCF_020557395#LIZ56_RS00905
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 491 · GCF_020557395
AssemblyASM2055739v1 · Contighaploid
Genome composition3 324 734 bp · 41,0% GCAgathobacter rectalis
Signal transduction countsGenes 90 · HK 36 · RR 51CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAgathobacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Agathobacter
Related genes
Preview from the same derived genome key