1 HAMP#1
294-365 aa · 72 aa · 12.2% of protein
Raw token
HAMP:294:0.00000000607:365:72:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ERE_RS04610
Histidine kinase, Classic
Agathobacter rectalis M104/1 · GCF_000209955
ClassHKTypeClassicLength589 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000209955#ERE_RS04610Stable P2CS identifier used across views.
GenomeGCF_000209955Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Agathobacter
Domain signature
Compact overview inferred from the domain field
HAMPHis_kinaseHATPase_c
Protein length589 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage255 / 589 aa (43.3%)Merged over positioned domains only.
Domain description1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa589 aa
Domain-by-domain annotation3 items
2 His_kinase#2
384-462 aa · 79 aa · 13.4% of protein
Raw token
His_kinase:384:2.33e-31:462:80:803 HATPase_c#3
479-582 aa · 104 aa · 17.7% of protein
Raw token
HATPase_c:479:0.00000000000000151:582:112:109- Raw architecture: HAMP:294:0.00000000607:365:72:69#His_kinase:384:2.33e-31:462:80:80#HATPase_c:479:0.00000000000000151:582:112:109
- Domain description: 1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000209955::NC_021044.1::G00009
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1000853-1004117Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_000209955::NC_021044.1::G00009Context members
ERE_RS04605ERE_RS04610
Partner locus tags
ERE_RS04605ERE_RS04610
Partner old locus tags
ERE_09680
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_022292570.1Primary protein accession used for annex mappings.
UniProt accessionA0A173R808Primary UniProt accession resolved in the annex database.
UniProt IDA0A173R808_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagERE_RS04610Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNC_021044.1Sequence record reported by the local genomic context database.
Genomic interval1 002 348-1 004 117 nt1 770 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1 000 853-1 004 117 ntGCF_000209955::NC_021044.1::G00009
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000209955::NC_021044.1::G00009Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNC_021044.1All displayed genes belong to this local TCS context.
Neighborhood span1 000 853-1 004 117 nt3 265 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 000 853 nt1 004 117 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ERE_RS04605GCF_000209955#ERE_RS04605
RRunclassified
1 000 853-1 002 355 nt · Reverse (-)
ERE_RS04610GCF_000209955#ERE_RS04610
HKClassicCurrent focus
1 002 348-1 004 117 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000209955#ERE_RS04610The current gene is the representative for this cluster.
PFAM architectureHAMP + His_kinase + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1114829
Simplified PFAM architecture for HKOC_1114829
PFAM domain coverage: 230 / 589 aa (39.0%)
1 aa589 aa
HAMPHis_kinaseHATPase_c
- Simplified architecture: HAMP + His_kinase + HATPase_c
- Raw architecture: HAMP[318-366] | His_kinase[385-462] | HATPase_c[479-581]
- Domain count: 3
- Matched identifier: HKOC_1114829
- Positioned domains: HAMP 318-366 ; His_kinase 385-462 ; HATPase_c 479-581
Cluster members and taxonomy
Representative gene: GCF_000209955#ERE_RS04610
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 657 317 · GCF_000209955
AssemblyASM20995v1 · Chromosomehaploid
Genome composition3 698 419 bp · 40,5% GCAgathobacter rectalis M104/1
Signal transduction countsGenes 73 · HK 30 · RR 41CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAgathobacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Agathobacter
Related genes
Preview from the same derived genome key