1 Response_reg#1
4-112 aa · 109 aa · 48.9% of protein
Raw token
Response_reg:4:6.22e-30:112:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LIZ56_RS05660
Response regulator OmpR family
Agathobacter rectalis · GCF_020557395
ClassRRTypeOmpRLength223 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_020557395#LIZ56_RS05660Stable P2CS identifier used across views.
GenomeGCF_020557395Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Agathobacter
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length223 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage181 / 223 aa (81.2%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa223 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
145-216 aa · 72 aa · 32.3% of protein
Raw token
Trans_reg_C:145:1e-18:216:77:77- Raw architecture: Response_reg:4:6.22e-30:112:111:111#Trans_reg_C:145:1e-18:216:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_020557395::NZ_JAJCJK010000006.1::G00048
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span76599-78583Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLIZ56_05655RefSeq proteinWP_306780708.1
Context group ID
GCF_020557395::NZ_JAJCJK010000006.1::G00048Context members
LIZ56_RS05660LIZ56_RS05665
Partner locus tags
LIZ56_RS05660LIZ56_RS05665
Partner old locus tags
LIZ56_05655LIZ56_05660
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_306780708.1Primary protein accession used for annex mappings.
UniProt accessionA0AAW4UBL0Primary UniProt accession resolved in the annex database.
UniProt IDA0AAW4UBL0_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLIZ56_RS05660Primary locus identifier stored in the genes table.
Old locus tagLIZ56_05655Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAJCJK010000006.1Sequence record reported by the local genomic context database.
Genomic interval76 599-77 270 nt672 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span76 599-78 583 ntGCF_020557395::NZ_JAJCJK010000006.1::G00048
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020557395::NZ_JAJCJK010000006.1::G00048Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJCJK010000006.1All displayed genes belong to this local TCS context.
Neighborhood span76 599-78 583 nt1 985 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
76 599 nt78 583 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
LIZ56_RS05660GCF_020557395#LIZ56_RS05660
RROmpRCurrent focus
76 599-77 270 nt · Forward (+)
LIZ56_RS05665GCF_020557395#LIZ56_RS05665
HKClassic
77 309-78 583 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_020557395#LIZ56_RS05660The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1612380
Simplified PFAM architecture for RROC_1612380
PFAM domain coverage: 181 / 223 aa (81.2%)
1 aa223 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-112] | Trans_reg_C[145-216]
- Domain count: 2
- Matched identifier: RROC_1612380
- Positioned domains: Response_reg 4-112 ; Trans_reg_C 145-216
Cluster members and taxonomy
Representative gene: GCF_020557395#LIZ56_RS05660
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 491 · GCF_020557395
AssemblyASM2055739v1 · Contighaploid
Genome composition3 324 734 bp · 41,0% GCAgathobacter rectalis
Signal transduction countsGenes 90 · HK 36 · RR 51CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAgathobacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Agathobacter
Related genes
Preview from the same derived genome key