1 HAMP#1
286-355 aa · 70 aa · 12.0% of protein
Raw token
HAMP:286:0.000000000461:355:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LIP95_RS06590
Histidine kinase, Classic
Fusicatenibacter saccharivorans · GCF_020537905
ClassHKTypeClassicLength585 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_020537905#LIP95_RS06590Stable P2CS identifier used across views.
GenomeGCF_020537905Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Fusicatenibacter
Domain signature
Compact overview inferred from the domain field
HAMPHis_kinaseHATPase_c
Protein length585 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage258 / 585 aa (44.1%)Merged over positioned domains only.
Domain description1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa585 aa
Domain-by-domain annotation3 items
2 His_kinase#2
377-456 aa · 80 aa · 13.7% of protein
Raw token
His_kinase:377:3.31e-31:456:80:803 HATPase_c#3
476-583 aa · 108 aa · 18.5% of protein
Raw token
HATPase_c:476:0.000000306:583:112:109- Raw architecture: HAMP:286:0.000000000461:355:70:69#His_kinase:377:3.31e-31:456:80:80#HATPase_c:476:0.000000306:583:112:109
- Domain description: 1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_020537905::NZ_JAJBNJ010000006.1::G00056
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span118913-122287Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLIP95_06585RefSeq proteinWP_118601256.1
Context group ID
GCF_020537905::NZ_JAJBNJ010000006.1::G00056Context members
LIP95_RS06590LIP95_RS06595
Partner locus tags
LIP95_RS06590LIP95_RS06595
Partner old locus tags
LIP95_06585LIP95_06590
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_118601256.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLIP95_RS06590Primary locus identifier stored in the genes table.
Old locus tagLIP95_06585Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAJBNJ010000006.1Sequence record reported by the local genomic context database.
Genomic interval118 913-120 670 nt1 758 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span118 913-122 287 ntGCF_020537905::NZ_JAJBNJ010000006.1::G00056
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020537905::NZ_JAJBNJ010000006.1::G00056Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJBNJ010000006.1All displayed genes belong to this local TCS context.
Neighborhood span118 913-122 287 nt3 375 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
118 913 nt122 287 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
LIP95_RS06590GCF_020537905#LIP95_RS06590
HKClassicCurrent focus
118 913-120 670 nt · Forward (+)
LIP95_RS06595GCF_020537905#LIP95_RS06595
RRunclassified
120 692-122 287 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003479155#DWX26_RS08880Use this link to inspect the representative gene detail.
PFAM architectureHAMP + His_kinase + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1137546
Simplified PFAM architecture for HKOC_1137546
PFAM domain coverage: 238 / 585 aa (40.7%)
1 aa585 aa
HAMPHis_kinaseHATPase_c
- Simplified architecture: HAMP + His_kinase + HATPase_c
- Raw architecture: HAMP[304-353] | His_kinase[377-456] | HATPase_c[476-583]
- Domain count: 3
- Matched identifier: HKOC_1137546
- Positioned domains: HAMP 304-353 ; His_kinase 377-456 ; HATPase_c 476-583
Cluster members and taxonomy
Representative gene: GCF_003479155#DWX26_RS08880
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 150 298 · GCF_020537905
AssemblyASM2053790v1 · Contighaploid
Genome composition3 643 235 bp · 47,5% GCFusicatenibacter saccharivorans
Signal transduction countsGenes 106 · HK 52 · RR 50CheA 0 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusFusicatenibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Fusicatenibacter
Related genes
Preview from the same derived genome key