1 Response_reg#1
4-112 aa · 109 aa · 49.3% of protein
Raw token
Response_reg:4:2.45e-28:112:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LIP95_RS01805
Response regulator OmpR family
Fusicatenibacter saccharivorans · GCF_020537905
ClassRRTypeOmpRLength221 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_020537905#LIP95_RS01805Stable P2CS identifier used across views.
GenomeGCF_020537905Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Fusicatenibacter
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length221 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage181 / 221 aa (81.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa221 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
146-217 aa · 72 aa · 32.6% of protein
Raw token
Trans_reg_C:146:1.24e-32:217:77:77- Raw architecture: Response_reg:4:2.45e-28:112:111:111#Trans_reg_C:146:1.24e-32:217:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_020537905::NZ_JAJBNJ010000002.1::G00018
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span18706-20806Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLIP95_01805RefSeq proteinWP_117950538.1
Context group ID
GCF_020537905::NZ_JAJBNJ010000002.1::G00018Context members
LIP95_RS01800LIP95_RS01805
Partner locus tags
LIP95_RS01800LIP95_RS01805
Partner old locus tags
LIP95_01800LIP95_01805
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_117950538.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLIP95_RS01805Primary locus identifier stored in the genes table.
Old locus tagLIP95_01805Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAJBNJ010000002.1Sequence record reported by the local genomic context database.
Genomic interval20 141-20 806 nt666 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span18 706-20 806 ntGCF_020537905::NZ_JAJBNJ010000002.1::G00018
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020537905::NZ_JAJBNJ010000002.1::G00018Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJBNJ010000002.1All displayed genes belong to this local TCS context.
Neighborhood span18 706-20 806 nt2 101 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
18 706 nt20 806 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
LIP95_RS01800GCF_020537905#LIP95_RS01800
HKClassic
18 706-20 157 nt · Reverse (-)
LIP95_RS01805GCF_020537905#LIP95_RS01805
RROmpRCurrent focus
20 141-20 806 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003465525#DWV51_RS14930Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1687497
Simplified PFAM architecture for RROC_1687497
PFAM domain coverage: 179 / 221 aa (81.0%)
1 aa221 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-110] | Trans_reg_C[146-217]
- Domain count: 2
- Matched identifier: RROC_1687497
- Positioned domains: Response_reg 4-110 ; Response_reg 4-110 ; Trans_reg_C 146-217 ; Trans_reg_C 146-217
Cluster members and taxonomy
Representative gene: GCF_003465525#DWV51_RS14930
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 150 298 · GCF_020537905
AssemblyASM2053790v1 · Contighaploid
Genome composition3 643 235 bp · 47,5% GCFusicatenibacter saccharivorans
Signal transduction countsGenes 106 · HK 52 · RR 50CheA 0 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusFusicatenibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Fusicatenibacter
Related genes
Preview from the same derived genome key