1 dCache_1#1
196-288 aa · 93 aa · 15.5% of protein
Raw token
dCache_1:196:0.000000275:288:98:195P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LIP95_RS01355
Histidine kinase, Classic
Fusicatenibacter saccharivorans · GCF_020537905
ClassHKTypeClassicLength600 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_020537905#LIP95_RS01355Stable P2CS identifier used across views.
GenomeGCF_020537905Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Fusicatenibacter
Domain signature
Compact overview inferred from the domain field
dCache_1HAMPHis_kinaseHATPase_c
Protein length600 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage347 / 600 aa (57.8%)Merged over positioned domains only.
Domain description1 dCache_1,1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa600 aa
Domain-by-domain annotation4 items
2 HAMP#2
305-375 aa · 71 aa · 11.8% of protein
Raw token
HAMP:305:0.00000000192:375:71:693 His_kinase#3
390-469 aa · 80 aa · 13.3% of protein
Raw token
His_kinase:390:3.05e-27:469:80:804 HATPase_c#4
488-590 aa · 103 aa · 17.2% of protein
Raw token
HATPase_c:488:0.00000000000602:590:109:109- Raw architecture: dCache_1:196:0.000000275:288:98:195#HAMP:305:0.00000000192:375:71:69#His_kinase:390:3.05e-27:469:80:80#HATPase_c:488:0.00000000000602:590:109:109
- Domain description: 1 dCache_1,1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_020537905::NZ_JAJBNJ010000001.1::G00002
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span300666-303982Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLIP95_01355RefSeq proteinWP_118718974.1
Context group ID
GCF_020537905::NZ_JAJBNJ010000001.1::G00002Context members
LIP95_RS01355LIP95_RS01360
Partner locus tags
LIP95_RS01355LIP95_RS01360
Partner old locus tags
LIP95_01355LIP95_01360
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_118718974.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLIP95_RS01355Primary locus identifier stored in the genes table.
Old locus tagLIP95_01355Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAJBNJ010000001.1Sequence record reported by the local genomic context database.
Genomic interval300 666-302 468 nt1 803 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span300 666-303 982 ntGCF_020537905::NZ_JAJBNJ010000001.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020537905::NZ_JAJBNJ010000001.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJBNJ010000001.1All displayed genes belong to this local TCS context.
Neighborhood span300 666-303 982 nt3 317 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
300 666 nt303 982 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
LIP95_RS01355GCF_020537905#LIP95_RS01355
HKClassicCurrent focus
300 666-302 468 nt · Reverse (-)
LIP95_RS01360GCF_020537905#LIP95_RS01360
RRunclassified
302 465-303 982 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003479665#DWW13_RS00600Use this link to inspect the representative gene detail.
PFAM architectureHAMP + His_kinase + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1053618
Simplified PFAM architecture for HKOC_1053618
PFAM domain coverage: 229 / 600 aa (38.2%)
1 aa600 aa
HAMPHis_kinaseHATPase_c
- Simplified architecture: HAMP + His_kinase + HATPase_c
- Raw architecture: HAMP[329-374] | His_kinase[390-468] | HATPase_c[487-590]
- Domain count: 3
- Matched identifier: HKOC_1053618
- Positioned domains: HAMP 329-374 ; His_kinase 390-468 ; HATPase_c 487-590
Cluster members and taxonomy
Representative gene: GCF_003479665#DWW13_RS00600
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 150 298 · GCF_020537905
AssemblyASM2053790v1 · Contighaploid
Genome composition3 643 235 bp · 47,5% GCFusicatenibacter saccharivorans
Signal transduction countsGenes 106 · HK 52 · RR 50CheA 0 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusFusicatenibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Fusicatenibacter
Related genes
Preview from the same derived genome key