1 HAMP#1
286-355 aa · 70 aa · 12.0% of protein
Raw token
HAMP:286:0.000000000461:355:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DWX26_RS08880
Histidine kinase, Classic
Blautia sp. AF19-1 · GCF_003479155
ClassHKTypeClassicLength585 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003479155#DWX26_RS08880Stable P2CS identifier used across views.
GenomeGCF_003479155Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
HAMPHis_kinaseHATPase_c
Protein length585 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage258 / 585 aa (44.1%)Merged over positioned domains only.
Domain description1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa585 aa
Domain-by-domain annotation3 items
2 His_kinase#2
377-456 aa · 80 aa · 13.7% of protein
Raw token
His_kinase:377:3.31e-31:456:80:803 HATPase_c#3
476-583 aa · 108 aa · 18.5% of protein
Raw token
HATPase_c:476:0.000000306:583:112:109- Raw architecture: HAMP:286:0.000000000461:355:70:69#His_kinase:377:3.31e-31:456:80:80#HATPase_c:476:0.000000306:583:112:109
- Domain description: 1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003479155::NZ_QUGQ01000011.1::G00005
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span16103-19477Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDWX26_08885RefSeq proteinWP_118601256.1
Context group ID
GCF_003479155::NZ_QUGQ01000011.1::G00005Context members
DWX26_RS08875DWX26_RS08880
Partner locus tags
DWX26_RS08875DWX26_RS08880
Partner old locus tags
DWX26_08880DWX26_08885
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_118601256.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDWX26_RS08880Primary locus identifier stored in the genes table.
Old locus tagDWX26_08885Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QUGQ01000011.1Sequence record reported by the local genomic context database.
Genomic interval17 720-19 477 nt1 758 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span16 103-19 477 ntGCF_003479155::NZ_QUGQ01000011.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003479155::NZ_QUGQ01000011.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QUGQ01000011.1All displayed genes belong to this local TCS context.
Neighborhood span16 103-19 477 nt3 375 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
16 103 nt19 477 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DWX26_RS08875GCF_003479155#DWX26_RS08875
RRunclassified
16 103-17 698 nt · Reverse (-)
DWX26_RS08880GCF_003479155#DWX26_RS08880
HKClassicCurrent focus
17 720-19 477 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003479155#DWX26_RS08880The current gene is the representative for this cluster.
PFAM architectureHAMP + His_kinase + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1137546
Simplified PFAM architecture for HKOC_1137546
PFAM domain coverage: 238 / 585 aa (40.7%)
1 aa585 aa
HAMPHis_kinaseHATPase_c
- Simplified architecture: HAMP + His_kinase + HATPase_c
- Raw architecture: HAMP[304-353] | His_kinase[377-456] | HATPase_c[476-583]
- Domain count: 3
- Matched identifier: HKOC_1137546
- Positioned domains: HAMP 304-353 ; His_kinase 377-456 ; HATPase_c 476-583
Cluster members and taxonomy
Representative gene: GCF_003479155#DWX26_RS08880
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 292 960 · GCF_003479155
AssemblyASM347915v1 · Scaffoldhaploid
Genome composition3 558 929 bp · 47,5% GCBlautia sp. AF19-1
Signal transduction countsGenes 98 · HK 49 · RR 46CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key