1 Response_reg#1
4-116 aa · 113 aa · 22.4% of protein
Raw token
Response_reg:4:2.74e-29:116:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LIP95_RS01360
Response regulator, unclassified
Fusicatenibacter saccharivorans · GCF_020537905
ClassRRTypeunclassifiedLength505 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_020537905#LIP95_RS01360Stable P2CS identifier used across views.
GenomeGCF_020537905Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Fusicatenibacter
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length505 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage184 / 505 aa (36.4%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa505 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
408-449 aa · 42 aa · 8.3% of protein
Raw token
HTH_AraC:408:0.00000000239:449:42:423 HTH_AraC#3
470-498 aa · 29 aa · 5.7% of protein
Raw token
HTH_AraC:470:0.000000529:498:29:42- Raw architecture: Response_reg:4:2.74e-29:116:113:111#HTH_AraC:408:0.00000000239:449:42:42#HTH_AraC:470:0.000000529:498:29:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_020537905::NZ_JAJBNJ010000001.1::G00002
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span300666-303982Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLIP95_01360RefSeq proteinWP_118718972.1
Context group ID
GCF_020537905::NZ_JAJBNJ010000001.1::G00002Context members
LIP95_RS01355LIP95_RS01360
Partner locus tags
LIP95_RS01355LIP95_RS01360
Partner old locus tags
LIP95_01355LIP95_01360
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_118718972.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLIP95_RS01360Primary locus identifier stored in the genes table.
Old locus tagLIP95_01360Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAJBNJ010000001.1Sequence record reported by the local genomic context database.
Genomic interval302 465-303 982 nt1 518 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span300 666-303 982 ntGCF_020537905::NZ_JAJBNJ010000001.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020537905::NZ_JAJBNJ010000001.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJBNJ010000001.1All displayed genes belong to this local TCS context.
Neighborhood span300 666-303 982 nt3 317 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
300 666 nt303 982 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
LIP95_RS01355GCF_020537905#LIP95_RS01355
HKClassic
300 666-302 468 nt · Reverse (-)
LIP95_RS01360GCF_020537905#LIP95_RS01360
RRunclassifiedCurrent focus
302 465-303 982 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003479665#DWW13_RS00595Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0152600
Simplified PFAM architecture for RROC_0152600
PFAM domain coverage: 191 / 505 aa (37.8%)
1 aa505 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[4-115] | HTH_18[422-500]
- Domain count: 2
- Matched identifier: RROC_0152600
- Positioned domains: Response_reg 4-115 ; Response_reg 4-115 ; HTH_18 422-500 ; HTH_18 422-500
Cluster members and taxonomy
Representative gene: GCF_003479665#DWW13_RS00595
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 150 298 · GCF_020537905
AssemblyASM2053790v1 · Contighaploid
Genome composition3 643 235 bp · 47,5% GCFusicatenibacter saccharivorans
Signal transduction countsGenes 106 · HK 52 · RR 50CheA 0 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusFusicatenibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Fusicatenibacter
Related genes
Preview from the same derived genome key