1 Response_reg#1
12-102 aa · 91 aa · 42.3% of protein
Raw token
Response_reg:12:1.04e-34:102:91:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LIP95_RS03455
Response regulator OmpR family
Fusicatenibacter saccharivorans · GCF_020537905
ClassRRTypeOmpRLength215 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_020537905#LIP95_RS03455Stable P2CS identifier used across views.
GenomeGCF_020537905Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Fusicatenibacter
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length215 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage167 / 215 aa (77.7%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa215 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
134-209 aa · 76 aa · 35.3% of protein
Raw token
Trans_reg_C:134:4.43e-22:209:78:77- Raw architecture: Response_reg:12:1.04e-34:102:91:111#Trans_reg_C:134:4.43e-22:209:78:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_020537905::NZ_JAJBNJ010000003.1::G00033
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span7432-9248Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLIP95_03450RefSeq proteinWP_243105462.1
Context group ID
GCF_020537905::NZ_JAJBNJ010000003.1::G00033Context members
LIP95_RS03450LIP95_RS03455
Partner locus tags
LIP95_RS03450LIP95_RS03455
Partner old locus tags
LIP95_03445LIP95_03450
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_243105462.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLIP95_RS03455Primary locus identifier stored in the genes table.
Old locus tagLIP95_03450Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAJBNJ010000003.1Sequence record reported by the local genomic context database.
Genomic interval8 601-9 248 nt648 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span7 432-9 248 ntGCF_020537905::NZ_JAJBNJ010000003.1::G00033
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020537905::NZ_JAJBNJ010000003.1::G00033Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJBNJ010000003.1All displayed genes belong to this local TCS context.
Neighborhood span7 432-9 248 nt1 817 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
7 432 nt9 248 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
LIP95_RS03450GCF_020537905#LIP95_RS03450
HKClassic
7 432-8 604 nt · Reverse (-)
LIP95_RS03455GCF_020537905#LIP95_RS03455
RROmpRCurrent focus
8 601-9 248 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003480555#DW769_RS14620Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1913344
Simplified PFAM architecture for RROC_1913344
PFAM domain coverage: 172 / 215 aa (80.0%)
1 aa215 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-102] | Trans_reg_C[136-208]
- Domain count: 2
- Matched identifier: RROC_1913344
- Positioned domains: Response_reg 4-102 ; Response_reg 4-102 ; Trans_reg_C 136-208 ; Trans_reg_C 136-208
Cluster members and taxonomy
Representative gene: GCF_003480555#DW769_RS14620
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 150 298 · GCF_020537905
AssemblyASM2053790v1 · Contighaploid
Genome composition3 643 235 bp · 47,5% GCFusicatenibacter saccharivorans
Signal transduction countsGenes 106 · HK 52 · RR 50CheA 0 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusFusicatenibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Fusicatenibacter
Related genes
Preview from the same derived genome key