1 Response_reg#1
12-102 aa · 91 aa · 42.3% of protein
Raw token
Response_reg:12:1.04e-34:102:91:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW769_RS14620
Response regulator OmpR family
Blautia sp. AM29-29 · GCF_003480555
ClassRRTypeOmpRLength215 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003480555#DW769_RS14620Stable P2CS identifier used across views.
GenomeGCF_003480555Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length215 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage167 / 215 aa (77.7%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa215 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
134-209 aa · 76 aa · 35.3% of protein
Raw token
Trans_reg_C:134:4.43e-22:209:78:77- Raw architecture: Response_reg:12:1.04e-34:102:91:111#Trans_reg_C:134:4.43e-22:209:78:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003480555::NZ_QUJD01000024.1::G00027
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span5160-6976Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW769_14625RefSeq proteinWP_243105462.1
Context group ID
GCF_003480555::NZ_QUJD01000024.1::G00027Context members
DW769_RS14615DW769_RS14620
Partner locus tags
DW769_RS14615DW769_RS14620
Partner old locus tags
DW769_14620DW769_14625
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_243105462.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW769_RS14620Primary locus identifier stored in the genes table.
Old locus tagDW769_14625Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QUJD01000024.1Sequence record reported by the local genomic context database.
Genomic interval6 329-6 976 nt648 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span5 160-6 976 ntGCF_003480555::NZ_QUJD01000024.1::G00027
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003480555::NZ_QUJD01000024.1::G00027Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QUJD01000024.1All displayed genes belong to this local TCS context.
Neighborhood span5 160-6 976 nt1 817 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
5 160 nt6 976 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DW769_RS14615GCF_003480555#DW769_RS14615
HKClassic
5 160-6 332 nt · Reverse (-)
DW769_RS14620GCF_003480555#DW769_RS14620
RROmpRCurrent focus
6 329-6 976 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003480555#DW769_RS14620The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1913344
Simplified PFAM architecture for RROC_1913344
PFAM domain coverage: 172 / 215 aa (80.0%)
1 aa215 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-102] | Trans_reg_C[136-208]
- Domain count: 2
- Matched identifier: RROC_1913344
- Positioned domains: Response_reg 4-102 ; Response_reg 4-102 ; Trans_reg_C 136-208 ; Trans_reg_C 136-208
Cluster members and taxonomy
Representative gene: GCF_003480555#DW769_RS14620
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 292 975 · GCF_003480555
AssemblyASM348055v1 · Scaffoldhaploid
Genome composition3 523 408 bp · 47,5% GCBlautia sp. AM29-29
Signal transduction countsGenes 87 · HK 47 · RR 39CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key