1 HAMP#1
181-250 aa · 70 aa · 14.6% of protein
Raw token
HAMP:181:0.000000000000534:250:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
I2D69_RS13080
Histidine kinase, Classic
Ruminococcus sp. D54t1_190329_F1 · GCF_015551645
ClassHKTypeClassicLength478 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_015551645#I2D69_RS13080Stable P2CS identifier used across views.
GenomeGCF_015551645Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Ruminococcus
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length478 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage234 / 478 aa (49.0%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa478 aa
Domain-by-domain annotation3 items
2 HisKA#2
262-322 aa · 61 aa · 12.8% of protein
Raw token
HisKA:262:0.000000000032:322:61:643 HATPase_c#3
375-477 aa · 103 aa · 21.5% of protein
Raw token
HATPase_c:375:9.62e-23:477:106:109- Raw architecture: HAMP:181:0.000000000000534:250:70:69#HisKA:262:0.000000000032:322:61:64#HATPase_c:375:9.62e-23:477:106:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_015551645::NZ_JADNDC010000027.1::G00038
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span14063-16161Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_015551645::NZ_JADNDC010000027.1::G00038Context members
I2D69_RS13080I2D69_RS13085
Partner locus tags
I2D69_RS13080I2D69_RS13085
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_195380019.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagI2D69_RS13080Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JADNDC010000027.1Sequence record reported by the local genomic context database.
Genomic interval14 063-15 499 nt1 437 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span14 063-16 161 ntGCF_015551645::NZ_JADNDC010000027.1::G00038
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_015551645::NZ_JADNDC010000027.1::G00038Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JADNDC010000027.1All displayed genes belong to this local TCS context.
Neighborhood span14 063-16 161 nt2 099 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
14 063 nt16 161 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
I2D69_RS13080GCF_015551645#I2D69_RS13080
HKClassicCurrent focus
14 063-15 499 nt · Reverse (-)
I2D69_RS13085GCF_015551645#I2D69_RS13085
RROmpR
15 496-16 161 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_015551645#I2D69_RS13080The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1640347
Simplified PFAM architecture for HKOC_1640347
PFAM domain coverage: 211 / 478 aa (44.1%)
1 aa478 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[200-248] | HisKA[262-321] | HATPase_c[375-476]
- Domain count: 3
- Matched identifier: HKOC_1640347
- Positioned domains: HAMP 200-248 ; HisKA 262-321 ; HATPase_c 375-476
Cluster members and taxonomy
Representative gene: GCF_015551645#I2D69_RS13080
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 787 114 · GCF_015551645
AssemblyASM1555164v1 · Scaffoldhaploid
Genome composition4 332 946 bp · 43,0% GCRuminococcus sp. D54t1_190329_F1
Signal transduction countsGenes 138 · HK 68 · RR 69CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusRuminococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Ruminococcus
Related genes
Preview from the same derived genome key