1 dCache_1#1
190-299 aa · 110 aa · 18.1% of protein
Raw token
dCache_1:190:0.0000437:299:116:195P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
I2D69_RS00775
Histidine kinase, Classic
Ruminococcus sp. D54t1_190329_F1 · GCF_015551645
ClassHKTypeClassicLength609 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_015551645#I2D69_RS00775Stable P2CS identifier used across views.
GenomeGCF_015551645Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Ruminococcus
Domain signature
Compact overview inferred from the domain field
dCache_1HAMPHis_kinaseHATPase_c
Protein length609 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage366 / 609 aa (60.1%)Merged over positioned domains only.
Domain description1 dCache_1,1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa609 aa
Domain-by-domain annotation4 items
2 HAMP#2
316-385 aa · 70 aa · 11.5% of protein
Raw token
HAMP:316:0.0000000057:385:71:693 His_kinase#3
400-479 aa · 80 aa · 13.1% of protein
Raw token
His_kinase:400:1.77e-27:479:80:804 HATPase_c#4
499-604 aa · 106 aa · 17.4% of protein
Raw token
HATPase_c:499:0.000000000000176:604:109:109- Raw architecture: dCache_1:190:0.0000437:299:116:195#HAMP:316:0.0000000057:385:71:69#His_kinase:400:1.77e-27:479:80:80#HATPase_c:499:0.000000000000176:604:109:109
- Domain description: 1 dCache_1,1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_015551645::NZ_JADNDC010000001.1::G00024
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span168867-172316Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_015551645::NZ_JADNDC010000001.1::G00024Context members
I2D69_RS00775I2D69_RS00780
Partner locus tags
I2D69_RS00775I2D69_RS00780
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_195379219.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagI2D69_RS00775Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JADNDC010000001.1Sequence record reported by the local genomic context database.
Genomic interval168 867-170 696 nt1 830 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span168 867-172 316 ntGCF_015551645::NZ_JADNDC010000001.1::G00024
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_015551645::NZ_JADNDC010000001.1::G00024Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JADNDC010000001.1All displayed genes belong to this local TCS context.
Neighborhood span168 867-172 316 nt3 450 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
168 867 nt172 316 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
I2D69_RS00775GCF_015551645#I2D69_RS00775
HKClassicCurrent focus
168 867-170 696 nt · Reverse (-)
I2D69_RS00780GCF_015551645#I2D69_RS00780
RRunclassified
170 769-172 316 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_015551645#I2D69_RS00775The current gene is the representative for this cluster.
PFAM architectureHis_kinase + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1010525
Simplified PFAM architecture for HKOC_1010525
PFAM domain coverage: 184 / 609 aa (30.2%)
1 aa609 aa
His_kinaseHATPase_c
- Simplified architecture: His_kinase + HATPase_c
- Raw architecture: His_kinase[400-478] | HATPase_c[499-603]
- Domain count: 2
- Matched identifier: HKOC_1010525
- Positioned domains: His_kinase 400-478 ; HATPase_c 499-603
Cluster members and taxonomy
Representative gene: GCF_015551645#I2D69_RS00775
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 787 114 · GCF_015551645
AssemblyASM1555164v1 · Scaffoldhaploid
Genome composition4 332 946 bp · 43,0% GCRuminococcus sp. D54t1_190329_F1
Signal transduction countsGenes 138 · HK 68 · RR 69CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusRuminococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Ruminococcus
Related genes
Preview from the same derived genome key