1 Response_reg#1
10-116 aa · 107 aa · 13.2% of protein
Raw token
Response_reg:10:1.2e-26:116:108:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
I2D69_RS01850
Response regulator, RpfG family
Ruminococcus sp. D54t1_190329_F1 · GCF_015551645
ClassRRTypeRpfGLength808 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_015551645#I2D69_RS01850Stable P2CS identifier used across views.
GenomeGCF_015551645Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Ruminococcus
Domain signature
Compact overview inferred from the domain field
Response_regHDGGDEF
Protein length808 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage347 / 808 aa (42.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 HD,1 GGDEFSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa808 aa
Domain-by-domain annotation3 items
2 HD#2
171-305 aa · 135 aa · 16.7% of protein
Raw token
HD:171:0.0000000000000349:305:135:1103 GGDEF#3
675-779 aa · 105 aa · 13.0% of protein
Raw token
GGDEF:675:1.14e-24:779:113:160- Raw architecture: Response_reg:10:1.2e-26:116:108:111#HD:171:0.0000000000000349:305:135:110#GGDEF:675:1.14e-24:779:113:160
- Domain description: 1 Response_reg,1 HD,1 GGDEF
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_015551645::NZ_JADNDC010000003.1::G00047
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span38981-41407Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_015551645::NZ_JADNDC010000003.1::G00047Context members
I2D69_RS01850
Partner locus tags
I2D69_RS01850
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_195379304.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagI2D69_RS01850Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JADNDC010000003.1Sequence record reported by the local genomic context database.
Genomic interval38 981-41 407 nt2 427 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span38 981-41 407 ntGCF_015551645::NZ_JADNDC010000003.1::G00047
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_015551645::NZ_JADNDC010000003.1::G00047Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JADNDC010000003.1All displayed genes belong to this local TCS context.
Neighborhood span38 981-41 407 nt2 427 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
38 981 nt41 407 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
I2D69_RS01850GCF_015551645#I2D69_RS01850
RRRpfGCurrent focus
38 981-41 407 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_015551645#I2D69_RS01850The current gene is the representative for this cluster.
PFAM architectureResponse_reg + HD_5 + GGDEF3 domains in the representative PFAM annotation.
PFAM architecture for RROC_0015592
Simplified PFAM architecture for RROC_0015592
PFAM domain coverage: 370 / 808 aa (45.8%)
1 aa808 aa
Response_regHD_5GGDEF
- Simplified architecture: Response_reg + HD_5 + GGDEF
- Raw architecture: Response_reg[10-118] | HD_5[170-325] | GGDEF[675-779]
- Domain count: 3
- Matched identifier: RROC_0015592
- Positioned domains: Response_reg 10-118 ; HD_5 170-325 ; GGDEF 675-779
Cluster members and taxonomy
Representative gene: GCF_015551645#I2D69_RS01850
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 787 114 · GCF_015551645
AssemblyASM1555164v1 · Scaffoldhaploid
Genome composition4 332 946 bp · 43,0% GCRuminococcus sp. D54t1_190329_F1
Signal transduction countsGenes 138 · HK 68 · RR 69CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusRuminococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Ruminococcus
Related genes
Preview from the same derived genome key