1 Response_reg#1
4-116 aa · 113 aa · 20.9% of protein
Raw token
Response_reg:4:1.84e-24:116:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
I2D69_RS00725
Response regulator, unclassified
Ruminococcus sp. D54t1_190329_F1 · GCF_015551645
ClassRRTypeunclassifiedLength540 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_015551645#I2D69_RS00725Stable P2CS identifier used across views.
GenomeGCF_015551645Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Ruminococcus
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length540 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage155 / 540 aa (28.7%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa540 aa
Domain-by-domain annotation2 items
2 HTH_AraC#2
443-484 aa · 42 aa · 7.8% of protein
Raw token
HTH_AraC:443:0.00000744:484:42:42- Raw architecture: Response_reg:4:1.84e-24:116:113:111#HTH_AraC:443:0.00000744:484:42:42
- Domain description: 1 Response_reg,1 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_015551645::NZ_JADNDC010000001.1::G00022
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span154521-156143Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_015551645::NZ_JADNDC010000001.1::G00022Context members
I2D69_RS00725
Partner locus tags
I2D69_RS00725
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_173770688.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagI2D69_RS00725Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JADNDC010000001.1Sequence record reported by the local genomic context database.
Genomic interval154 521-156 143 nt1 623 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span154 521-156 143 ntGCF_015551645::NZ_JADNDC010000001.1::G00022
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_015551645::NZ_JADNDC010000001.1::G00022Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JADNDC010000001.1All displayed genes belong to this local TCS context.
Neighborhood span154 521-156 143 nt1 623 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
154 521 nt156 143 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
I2D69_RS00725GCF_015551645#I2D69_RS00725
RRunclassifiedCurrent focus
154 521-156 143 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_013302375#G5A01_RS02110Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + GGDEF_2 + HTH_183 domains in the representative PFAM annotation.
PFAM architecture for RROC_0090103
Simplified PFAM architecture for RROC_0090103
PFAM domain coverage: 323 / 540 aa (59.8%)
1 aa540 aa
Response_regGGDEF_2HTH_18
- Simplified architecture: Response_reg + GGDEF_2 + HTH_18
- Raw architecture: Response_reg[4-116] | GGDEF_2[169-300] | HTH_18[458-535]
- Domain count: 3
- Matched identifier: RROC_0090103
- Positioned domains: Response_reg 4-116 ; GGDEF_2 169-300 ; HTH_18 458-535
Cluster members and taxonomy
Representative gene: GCF_013302375#G5A01_RS02110
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 787 114 · GCF_015551645
AssemblyASM1555164v1 · Scaffoldhaploid
Genome composition4 332 946 bp · 43,0% GCRuminococcus sp. D54t1_190329_F1
Signal transduction countsGenes 138 · HK 68 · RR 69CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusRuminococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Ruminococcus
Related genes
Preview from the same derived genome key