1 HAMP#1
88-156 aa · 69 aa · 17.0% of protein
Raw token
HAMP:88:0.0000000000000559:156:69:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
G5B17_RS01300
Histidine kinase, Classic
Blautia faecis · GCF_013302345
ClassHKTypeClassicLength405 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_013302345#G5B17_RS01300Stable P2CS identifier used across views.
GenomeGCF_013302345Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length405 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage246 / 405 aa (60.7%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa405 aa
Domain-by-domain annotation3 items
2 HisKA#2
163-228 aa · 66 aa · 16.3% of protein
Raw token
HisKA:163:0.000000000000224:228:66:643 HATPase_c#3
290-400 aa · 111 aa · 27.4% of protein
Raw token
HATPase_c:290:1.05e-30:400:111:109- Raw architecture: HAMP:88:0.0000000000000559:156:69:69#HisKA:163:0.000000000000224:228:66:64#HATPase_c:290:1.05e-30:400:111:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_013302345::NZ_JAAITS010000003.1::G00048
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span14339-16227Genomic interval covered by the local TCS group.
Identifiers
Old locus tagG5B17_01285RefSeq proteinWP_243879971.1
Context group ID
GCF_013302345::NZ_JAAITS010000003.1::G00048Context members
G5B17_RS01295G5B17_RS01300
Partner locus tags
G5B17_RS01295G5B17_RS01300
Partner old locus tags
G5B17_01280G5B17_01285
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_243879971.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagG5B17_RS01300Primary locus identifier stored in the genes table.
Old locus tagG5B17_01285Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAAITS010000003.1Sequence record reported by the local genomic context database.
Genomic interval15 010-16 227 nt1 218 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span14 339-16 227 ntGCF_013302345::NZ_JAAITS010000003.1::G00048
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_013302345::NZ_JAAITS010000003.1::G00048Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAAITS010000003.1All displayed genes belong to this local TCS context.
Neighborhood span14 339-16 227 nt1 889 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
14 339 nt16 227 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
G5B17_RS01295GCF_013302345#G5B17_RS01295
RROmpR
14 339-15 013 nt · Forward (+)
G5B17_RS01300GCF_013302345#G5B17_RS01300
HKClassicCurrent focus
15 010-16 227 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_013302345#G5B17_RS01300The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2400329
Simplified PFAM architecture for HKOC_2400329
PFAM domain coverage: 225 / 405 aa (55.6%)
1 aa405 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[105-157] | HisKA[163-226] | HATPase_c[293-400]
- Domain count: 3
- Matched identifier: HKOC_2400329
- Positioned domains: HAMP 105-157 ; HisKA 163-226 ; HATPase_c 293-400
Cluster members and taxonomy
Representative gene: GCF_013302345#G5B17_RS01300
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 871 665 · GCF_013302345
AssemblyASM1330234v1 · Contighaploid
Genome composition4 581 730 bp · 42,5% GCBlautia faecis
Signal transduction countsGenes 146 · HK 74 · RR 71CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key