1 HAMP#1
302-371 aa · 70 aa · 11.9% of protein
Raw token
HAMP:302:0.000000000173:371:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
G5B17_RS00030
Histidine kinase, Classic
Blautia faecis · GCF_013302345
ClassHKTypeClassicLength589 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_013302345#G5B17_RS00030Stable P2CS identifier used across views.
GenomeGCF_013302345Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
HAMPHis_kinaseHATPase_c
Protein length589 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage250 / 589 aa (42.4%)Merged over positioned domains only.
Domain description1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa589 aa
Domain-by-domain annotation3 items
2 His_kinase#2
386-465 aa · 80 aa · 13.6% of protein
Raw token
His_kinase:386:1.49e-28:465:80:803 HATPase_c#3
483-582 aa · 100 aa · 17.0% of protein
Raw token
HATPase_c:483:0.0000000228:582:109:109- Raw architecture: HAMP:302:0.000000000173:371:70:69#His_kinase:386:1.49e-28:465:80:80#HATPase_c:483:0.0000000228:582:109:109
- Domain description: 1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_013302345::NZ_JAAITS010000001.1::G00017
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span5339-8339Genomic interval covered by the local TCS group.
Identifiers
Old locus tagG5B17_00030RefSeq proteinWP_173735596.1
Context group ID
GCF_013302345::NZ_JAAITS010000001.1::G00017Context members
G5B17_RS00030G5B17_RS00035
Partner locus tags
G5B17_RS00030G5B17_RS00035
Partner old locus tags
G5B17_00030G5B17_00035
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_173735596.1Primary protein accession used for annex mappings.
UniProt accessionA0ABX2H115Primary UniProt accession resolved in the annex database.
UniProt IDA0ABX2H115_9FIRMDisplay identifier provided by UniProt.
GO / PubMed0 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagG5B17_RS00030Primary locus identifier stored in the genes table.
Old locus tagG5B17_00030Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAAITS010000001.1Sequence record reported by the local genomic context database.
Genomic interval5 339-7 108 nt1 770 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span5 339-8 339 ntGCF_013302345::NZ_JAAITS010000001.1::G00017
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_013302345::NZ_JAAITS010000001.1::G00017Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAAITS010000001.1All displayed genes belong to this local TCS context.
Neighborhood span5 339-8 339 nt3 001 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
5 339 nt8 339 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
G5B17_RS00030GCF_013302345#G5B17_RS00030
HKClassicCurrent focus
5 339-7 108 nt · Forward (+)
G5B17_RS00035GCF_013302345#G5B17_RS00035
RRunclassified
7 161-8 339 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_013302345#G5B17_RS00030The current gene is the representative for this cluster.
PFAM architectureHAMP + His_kinase + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1116793
Simplified PFAM architecture for HKOC_1116793
PFAM domain coverage: 223 / 589 aa (37.9%)
1 aa589 aa
HAMPHis_kinaseHATPase_c
- Simplified architecture: HAMP + His_kinase + HATPase_c
- Raw architecture: HAMP[324-370] | His_kinase[387-463] | HATPase_c[484-582]
- Domain count: 3
- Matched identifier: HKOC_1116793
- Positioned domains: HAMP 324-370 ; His_kinase 387-463 ; HATPase_c 484-582
Cluster members and taxonomy
Representative gene: GCF_013302345#G5B17_RS00030
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 871 665 · GCF_013302345
AssemblyASM1330234v1 · Contighaploid
Genome composition4 581 730 bp · 42,5% GCBlautia faecis
Signal transduction countsGenes 146 · HK 74 · RR 71CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key