1 GGDEF#1
199-346 aa · 148 aa · 14.3% of protein
Raw token
GGDEF:199:2.98e-19:346:157:160P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
G5B17_RS01230
Histidine kinase, Hybrid
Blautia faecis · GCF_013302345
ClassHKTypeHybridLength1038 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_013302345#G5B17_RS01230Stable P2CS identifier used across views.
GenomeGCF_013302345Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
GGDEFHisKAHATPase_cResponse_reg
Protein length1038 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage449 / 1038 aa (43.3%)Merged over positioned domains only.
Domain description1 GGDEF,1 HisKA,1 HATPase_c,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa1038 aa
Domain-by-domain annotation4 items
2 HisKA#2
673-739 aa · 67 aa · 6.5% of protein
Raw token
HisKA:673:0.00000000000000466:739:67:643 HATPase_c#3
788-905 aa · 118 aa · 11.4% of protein
Raw token
HATPase_c:788:2.11e-27:905:118:1094 Response_reg#4
917-1032 aa · 116 aa · 11.2% of protein
Raw token
Response_reg:917:1.21e-27:1032:116:111- Raw architecture: GGDEF:199:2.98e-19:346:157:160#HisKA:673:0.00000000000000466:739:67:64#HATPase_c:788:2.11e-27:905:118:109#Response_reg:917:1.21e-27:1032:116:111
- Domain description: 1 GGDEF,1 HisKA,1 HATPase_c,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_013302345::NZ_JAAITS010000003.1::G00047
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span1898-5014Genomic interval covered by the local TCS group.
Identifiers
Old locus tagG5B17_01215RefSeq proteinWP_173769125.1
Context group ID
GCF_013302345::NZ_JAAITS010000003.1::G00047Context members
G5B17_RS01230
Partner locus tags
G5B17_RS01230
Partner old locus tags
G5B17_01215
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_173769125.1Primary protein accession used for annex mappings.
UniProt accessionA0ABX2H201Primary UniProt accession resolved in the annex database.
UniProt IDA0ABX2H201_9FIRMDisplay identifier provided by UniProt.
GO / PubMed0 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagG5B17_RS01230Primary locus identifier stored in the genes table.
Old locus tagG5B17_01215Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAAITS010000003.1Sequence record reported by the local genomic context database.
Genomic interval1 898-5 014 nt3 117 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1 898-5 014 ntGCF_013302345::NZ_JAAITS010000003.1::G00047
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_013302345::NZ_JAAITS010000003.1::G00047Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAAITS010000003.1All displayed genes belong to this local TCS context.
Neighborhood span1 898-5 014 nt3 117 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 898 nt5 014 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
G5B17_RS01230GCF_013302345#G5B17_RS01230
HKHybridCurrent focus
1 898-5 014 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_013302345#G5B17_RS01230The current gene is the representative for this cluster.
PFAM architectureGGDEF + HisKA + HATPase_c + Response_reg4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0266563
Simplified PFAM architecture for HKOC_0266563
PFAM domain coverage: 446 / 1038 aa (43.0%)
1 aa1038 aa
GGDEFHisKAHATPase_cResponse_reg
- Simplified architecture: GGDEF + HisKA + HATPase_c + Response_reg
- Raw architecture: GGDEF[200-347] | HisKA[673-739] | HATPase_c[790-904] | Response_reg[917-1032]
- Domain count: 4
- Matched identifier: HKOC_0266563
- Positioned domains: GGDEF 200-347 ; HisKA 673-739 ; HATPase_c 790-904 ; Response_reg 917-1032
Cluster members and taxonomy
Representative gene: GCF_013302345#G5B17_RS01230
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 871 665 · GCF_013302345
AssemblyASM1330234v1 · Contighaploid
Genome composition4 581 730 bp · 42,5% GCBlautia faecis
Signal transduction countsGenes 146 · HK 74 · RR 71CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key