1 Response_reg#1
4-115 aa · 112 aa · 28.6% of protein
Raw token
Response_reg:4:4.38e-31:115:112:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
G5B17_RS00035
Response regulator, unclassified
Blautia faecis · GCF_013302345
ClassRRTypeunclassifiedLength392 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_013302345#G5B17_RS00035Stable P2CS identifier used across views.
GenomeGCF_013302345Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length392 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage192 / 392 aa (49.0%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa392 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
297-338 aa · 42 aa · 10.7% of protein
Raw token
HTH_AraC:297:0.00000000223:338:42:423 HTH_AraC#3
349-386 aa · 38 aa · 9.7% of protein
Raw token
HTH_AraC:349:0.0000000948:386:41:42- Raw architecture: Response_reg:4:4.38e-31:115:112:111#HTH_AraC:297:0.00000000223:338:42:42#HTH_AraC:349:0.0000000948:386:41:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_013302345::NZ_JAAITS010000001.1::G00017
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span5339-8339Genomic interval covered by the local TCS group.
Identifiers
Old locus tagG5B17_00035RefSeq proteinWP_173735595.1
Context group ID
GCF_013302345::NZ_JAAITS010000001.1::G00017Context members
G5B17_RS00030G5B17_RS00035
Partner locus tags
G5B17_RS00030G5B17_RS00035
Partner old locus tags
G5B17_00030G5B17_00035
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_173735595.1Primary protein accession used for annex mappings.
UniProt accessionA0ABX2H3K0Primary UniProt accession resolved in the annex database.
UniProt IDA0ABX2H3K0_9FIRMDisplay identifier provided by UniProt.
GO / PubMed0 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagG5B17_RS00035Primary locus identifier stored in the genes table.
Old locus tagG5B17_00035Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAAITS010000001.1Sequence record reported by the local genomic context database.
Genomic interval7 161-8 339 nt1 179 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span5 339-8 339 ntGCF_013302345::NZ_JAAITS010000001.1::G00017
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_013302345::NZ_JAAITS010000001.1::G00017Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAAITS010000001.1All displayed genes belong to this local TCS context.
Neighborhood span5 339-8 339 nt3 001 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
5 339 nt8 339 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
G5B17_RS00030GCF_013302345#G5B17_RS00030
HKClassic
5 339-7 108 nt · Forward (+)
G5B17_RS00035GCF_013302345#G5B17_RS00035
RRunclassifiedCurrent focus
7 161-8 339 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_013302345#G5B17_RS00035The current gene is the representative for this cluster.
PFAM architectureResponse_reg + HTH_AraC + HTH_AraC3 domains in the representative PFAM annotation.
PFAM architecture for RROC_0402754
Simplified PFAM architecture for RROC_0402754
PFAM domain coverage: 189 / 392 aa (48.2%)
1 aa392 aa
Response_regHTH_AraCHTH_AraC
- Simplified architecture: Response_reg + HTH_AraC + HTH_AraC
- Raw architecture: Response_reg[4-115] | HTH_AraC[297-338] | HTH_AraC[352-386]
- Domain count: 3
- Matched identifier: RROC_0402754
- Positioned domains: Response_reg 4-115 ; HTH_AraC 297-338 ; HTH_AraC 352-386
Cluster members and taxonomy
Representative gene: GCF_013302345#G5B17_RS00035
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 871 665 · GCF_013302345
AssemblyASM1330234v1 · Contighaploid
Genome composition4 581 730 bp · 42,5% GCBlautia faecis
Signal transduction countsGenes 146 · HK 74 · RR 71CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key