1 Response_reg#1
4-113 aa · 110 aa · 49.1% of protein
Raw token
Response_reg:4:3.17e-24:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
G4388_RS10905
Response regulator OmpR family
Coprococcus comes · GCF_013301465
ClassRRTypeOmpRLength224 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_013301465#G4388_RS10905Stable P2CS identifier used across views.
GenomeGCF_013301465Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Coprococcus
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length224 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage181 / 224 aa (80.8%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa224 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
145-215 aa · 71 aa · 31.7% of protein
Raw token
Trans_reg_C:145:2.17e-26:215:76:77- Raw architecture: Response_reg:4:3.17e-24:113:111:111#Trans_reg_C:145:2.17e-26:215:76:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_013301465::NZ_JAAIOJ010000016.1::G00013
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span32840-34740Genomic interval covered by the local TCS group.
Identifiers
Old locus tagG4388_10930RefSeq proteinWP_005333533.1
Context group ID
GCF_013301465::NZ_JAAIOJ010000016.1::G00013Context members
G4388_RS10900G4388_RS10905
Partner locus tags
G4388_RS10900G4388_RS10905
Partner old locus tags
G4388_10925G4388_10930
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_005333533.1Primary protein accession used for annex mappings.
UniProt accessionV8C7X8Primary UniProt accession resolved in the annex database.
UniProt IDV8C7X8_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagG4388_RS10905Primary locus identifier stored in the genes table.
Old locus tagG4388_10930Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAAIOJ010000016.1Sequence record reported by the local genomic context database.
Genomic interval34 066-34 740 nt675 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span32 840-34 740 ntGCF_013301465::NZ_JAAIOJ010000016.1::G00013
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_013301465::NZ_JAAIOJ010000016.1::G00013Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAAIOJ010000016.1All displayed genes belong to this local TCS context.
Neighborhood span32 840-34 740 nt1 901 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
32 840 nt34 740 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
G4388_RS10900GCF_013301465#G4388_RS10900
HKClassic
32 840-34 093 nt · Reverse (-)
G4388_RS10905GCF_013301465#G4388_RS10905
RROmpRCurrent focus
34 066-34 740 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000169235#DORFOR_RS09015Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1529304
Simplified PFAM architecture for RROC_1529304
PFAM domain coverage: 180 / 224 aa (80.4%)
1 aa224 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-112] | Trans_reg_C[146-216]
- Domain count: 2
- Matched identifier: RROC_1529304
- Positioned domains: Response_reg 4-112 ; Response_reg 4-112 ; Trans_reg_C 146-216 ; Trans_reg_C 146-216
Cluster members and taxonomy
Representative gene: GCF_000169235#DORFOR_RS09015
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 410 072 · GCF_013301465
AssemblyASM1330146v1 · Contighaploid
Genome composition3 191 192 bp · 42,5% GCCoprococcus comes
Signal transduction countsGenes 90 · HK 46 · RR 43CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusCoprococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Coprococcus
Related genes
Preview from the same derived genome key