1 HisKA#1
297-363 aa · 67 aa · 9.9% of protein
Raw token
HisKA:297:3.69e-17:363:67:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
G4388_RS01195
Histidine kinase, Hybrid
Coprococcus comes · GCF_013301465
ClassHKTypeHybridLength674 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_013301465#G4388_RS01195Stable P2CS identifier used across views.
GenomeGCF_013301465Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Coprococcus
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_cResponse_reg
Protein length674 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage297 / 674 aa (44.1%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_c,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa674 aa
Domain-by-domain annotation3 items
2 HATPase_c#2
409-524 aa · 116 aa · 17.2% of protein
Raw token
HATPase_c:409:2.9e-27:524:117:1093 Response_reg#3
552-665 aa · 114 aa · 16.9% of protein
Raw token
Response_reg:552:3.58e-28:665:114:111- Raw architecture: HisKA:297:3.69e-17:363:67:64#HATPase_c:409:2.9e-27:524:117:109#Response_reg:552:3.58e-28:665:114:111
- Domain description: 1 HisKA,1 HATPase_c,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_013301465::NZ_JAAIOJ010000001.1::G00020
Group size22 locus tags listed below.
HK / RR2 / 0Counts resolved for the local TCS neighborhood.
Context span264381-269309Genomic interval covered by the local TCS group.
Identifiers
Old locus tagG4388_01195RefSeq proteinWP_173689853.1
Context group ID
GCF_013301465::NZ_JAAIOJ010000001.1::G00020Context members
G4388_RS01190G4388_RS01195
Partner locus tags
G4388_RS01190G4388_RS01195
Partner old locus tags
G4388_01190G4388_01195
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_173689853.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagG4388_RS01195Primary locus identifier stored in the genes table.
Old locus tagG4388_01195Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAAIOJ010000001.1Sequence record reported by the local genomic context database.
Genomic interval267 285-269 309 nt2 025 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span264 381-269 309 ntGCF_013301465::NZ_JAAIOJ010000001.1::G00020
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_013301465::NZ_JAAIOJ010000001.1::G00020Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAAIOJ010000001.1All displayed genes belong to this local TCS context.
Neighborhood span264 381-269 309 nt4 929 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
264 381 nt269 309 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
G4388_RS01190GCF_013301465#G4388_RS01190
HKHybrid
264 381-267 248 nt · Reverse (-)
G4388_RS01195GCF_013301465#G4388_RS01195
HKHybridCurrent focus
267 285-269 309 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_013299755#G4366_RS01195Use this link to inspect the representative gene detail.
PFAM architectureSnoaL_3 + HisKA + HATPase_c + Response_reg4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0834441
Simplified PFAM architecture for HKOC_0834441
PFAM domain coverage: 402 / 674 aa (59.6%)
1 aa674 aa
SnoaL_3HisKAHATPase_cResponse_reg
- Simplified architecture: SnoaL_3 + HisKA + HATPase_c + Response_reg
- Raw architecture: SnoaL_3[25-130] | HisKA[297-362] | HATPase_c[410-525] | Response_reg[552-665]
- Domain count: 4
- Matched identifier: HKOC_0834441
- Positioned domains: SnoaL_3 25-130 ; HisKA 297-362 ; HATPase_c 410-525 ; Response_reg 552-665
Cluster members and taxonomy
Representative gene: GCF_013299755#G4366_RS01195
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 410 072 · GCF_013301465
AssemblyASM1330146v1 · Contighaploid
Genome composition3 191 192 bp · 42,5% GCCoprococcus comes
Signal transduction countsGenes 90 · HK 46 · RR 43CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusCoprococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Coprococcus
Related genes
Preview from the same derived genome key