1 Response_reg#1
5-109 aa · 105 aa · 48.4% of protein
Raw token
Response_reg:5:1.56e-26:109:107:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
G4388_RS01650
Response regulator OmpR family
Coprococcus comes · GCF_013301465
ClassRRTypeOmpRLength217 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_013301465#G4388_RS01650Stable P2CS identifier used across views.
GenomeGCF_013301465Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Coprococcus
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length217 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage179 / 217 aa (82.5%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa217 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
142-215 aa · 74 aa · 34.1% of protein
Raw token
Trans_reg_C:142:1.48e-25:215:77:77- Raw architecture: Response_reg:5:1.56e-26:109:107:111#Trans_reg_C:142:1.48e-25:215:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_013301465::NZ_JAAIOJ010000002.1::G00032
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span19970-21545Genomic interval covered by the local TCS group.
Identifiers
Old locus tagG4388_01655RefSeq proteinWP_173689929.1
Context group ID
GCF_013301465::NZ_JAAIOJ010000002.1::G00032Context members
G4388_RS01650G4388_RS01655
Partner locus tags
G4388_RS01650G4388_RS01655
Partner old locus tags
G4388_01655G4388_01660
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_173689929.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagG4388_RS01650Primary locus identifier stored in the genes table.
Old locus tagG4388_01655Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAAIOJ010000002.1Sequence record reported by the local genomic context database.
Genomic interval19 970-20 623 nt654 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span19 970-21 545 ntGCF_013301465::NZ_JAAIOJ010000002.1::G00032
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_013301465::NZ_JAAIOJ010000002.1::G00032Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAAIOJ010000002.1All displayed genes belong to this local TCS context.
Neighborhood span19 970-21 545 nt1 576 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
19 970 nt21 545 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
G4388_RS01650GCF_013301465#G4388_RS01650
RROmpRCurrent focus
19 970-20 623 nt · Forward (+)
G4388_RS01655GCF_013301465#G4388_RS01655
HKClassic
20 625-21 545 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_013299755#G4366_RS01935Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1858001
Simplified PFAM architecture for RROC_1858001
PFAM domain coverage: 181 / 217 aa (83.4%)
1 aa217 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-110] | Trans_reg_C[142-215]
- Domain count: 2
- Matched identifier: RROC_1858001
- Positioned domains: Response_reg 4-110 ; Trans_reg_C 142-215
Cluster members and taxonomy
Representative gene: GCF_013299755#G4366_RS01935
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 410 072 · GCF_013301465
AssemblyASM1330146v1 · Contighaploid
Genome composition3 191 192 bp · 42,5% GCCoprococcus comes
Signal transduction countsGenes 90 · HK 46 · RR 43CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusCoprococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Coprococcus
Related genes
Preview from the same derived genome key