1 Cache_3-Cache_2#1
135-279 aa · 145 aa · 20.3% of protein
Raw token
Cache_3-Cache_2:135:0.0000000156:279:151:291P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
G4388_RS01935
Histidine kinase, Hybrid
Coprococcus comes · GCF_013301465
ClassHKTypeHybridLength715 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_013301465#G4388_RS01935Stable P2CS identifier used across views.
GenomeGCF_013301465Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Coprococcus
Domain signature
Compact overview inferred from the domain field
Cache_3-Cache_2HisKAHATPase_cResponse_reg
Protein length715 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage443 / 715 aa (62.0%)Merged over positioned domains only.
Domain description1 Cache_3-Cache_2,1 HisKA,1 HATPase_c,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa715 aa
Domain-by-domain annotation4 items
2 HisKA#2
347-408 aa · 62 aa · 8.7% of protein
Raw token
HisKA:347:0.0000000522:408:62:643 HATPase_c#3
454-578 aa · 125 aa · 17.5% of protein
Raw token
HATPase_c:454:6.07e-26:578:126:1094 Response_reg#4
598-708 aa · 111 aa · 15.5% of protein
Raw token
Response_reg:598:0.0000000000028:708:113:111- Raw architecture: Cache_3-Cache_2:135:0.0000000156:279:151:291#HisKA:347:0.0000000522:408:62:64#HATPase_c:454:6.07e-26:578:126:109#Response_reg:598:0.0000000000028:708:113:111
- Domain description: 1 Cache_3-Cache_2,1 HisKA,1 HATPase_c,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_013301465::NZ_JAAIOJ010000002.1::G00034
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span91871-94018Genomic interval covered by the local TCS group.
Identifiers
Old locus tagG4388_01940RefSeq proteinWP_173689953.1
Context group ID
GCF_013301465::NZ_JAAIOJ010000002.1::G00034Context members
G4388_RS01935
Partner locus tags
G4388_RS01935
Partner old locus tags
G4388_01940
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_173689953.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagG4388_RS01935Primary locus identifier stored in the genes table.
Old locus tagG4388_01940Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAAIOJ010000002.1Sequence record reported by the local genomic context database.
Genomic interval91 871-94 018 nt2 148 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span91 871-94 018 ntGCF_013301465::NZ_JAAIOJ010000002.1::G00034
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_013301465::NZ_JAAIOJ010000002.1::G00034Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAAIOJ010000002.1All displayed genes belong to this local TCS context.
Neighborhood span91 871-94 018 nt2 148 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
91 871 nt94 018 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
G4388_RS01935GCF_013301465#G4388_RS01935
HKHybridCurrent focus
91 871-94 018 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_013299755#G4366_RS02220Use this link to inspect the representative gene detail.
PFAM architecturesCache_2 + HisKA + HATPase_c + Response_reg4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0742878
Simplified PFAM architecture for HKOC_0742878
PFAM domain coverage: 419 / 715 aa (58.6%)
1 aa715 aa
sCache_2HisKAHATPase_cResponse_reg
- Simplified architecture: sCache_2 + HisKA + HATPase_c + Response_reg
- Raw architecture: sCache_2[160-281] | HisKA[348-409] | HATPase_c[455-578] | Response_reg[598-708]
- Domain count: 4
- Matched identifier: HKOC_0742878
- Positioned domains: sCache_2 160-281 ; HisKA 348-409 ; HATPase_c 455-578 ; Response_reg 598-708
Cluster members and taxonomy
Representative gene: GCF_013299755#G4366_RS02220
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 410 072 · GCF_013301465
AssemblyASM1330146v1 · Contighaploid
Genome composition3 191 192 bp · 42,5% GCCoprococcus comes
Signal transduction countsGenes 90 · HK 46 · RR 43CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusCoprococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Coprococcus
Related genes
Preview from the same derived genome key