1 HisKA#1
466-531 aa · 66 aa · 9.5% of protein
Raw token
HisKA:466:1.31e-16:531:66:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
G4388_RS00485
Histidine kinase, Classic
Coprococcus comes · GCF_013301465
ClassHKTypeClassicLength694 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_013301465#G4388_RS00485Stable P2CS identifier used across views.
GenomeGCF_013301465Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Coprococcus
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length694 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage156 / 694 aa (22.5%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa694 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
583-672 aa · 90 aa · 13.0% of protein
Raw token
HATPase_c:583:0.0000000000000297:672:94:109- Raw architecture: HisKA:466:1.31e-16:531:66:64#HATPase_c:583:0.0000000000000297:672:94:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_013301465::NZ_JAAIOJ010000001.1::G00018
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span104081-106844Genomic interval covered by the local TCS group.
Identifiers
Old locus tagG4388_00480RefSeq proteinWP_173689789.1
Context group ID
GCF_013301465::NZ_JAAIOJ010000001.1::G00018Context members
G4388_RS00485G4388_RS00490
Partner locus tags
G4388_RS00485G4388_RS00490
Partner old locus tags
G4388_00480G4388_00485
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_173689789.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagG4388_RS00485Primary locus identifier stored in the genes table.
Old locus tagG4388_00480Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAAIOJ010000001.1Sequence record reported by the local genomic context database.
Genomic interval104 081-106 165 nt2 085 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span104 081-106 844 ntGCF_013301465::NZ_JAAIOJ010000001.1::G00018
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_013301465::NZ_JAAIOJ010000001.1::G00018Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAAIOJ010000001.1All displayed genes belong to this local TCS context.
Neighborhood span104 081-106 844 nt2 764 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
104 081 nt106 844 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
G4388_RS00485GCF_013301465#G4388_RS00485
HKClassicCurrent focus
104 081-106 165 nt · Reverse (-)
G4388_RS00490GCF_013301465#G4388_RS00490
RROmpR
106 137-106 844 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_013299755#G4366_RS00485Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0783124
Simplified PFAM architecture for HKOC_0783124
PFAM domain coverage: 161 / 694 aa (23.2%)
1 aa694 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[466-530] | HATPase_c[578-673]
- Domain count: 2
- Matched identifier: HKOC_0783124
- Positioned domains: HisKA 466-530 ; HATPase_c 578-673
Cluster members and taxonomy
Representative gene: GCF_013299755#G4366_RS00485
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 410 072 · GCF_013301465
AssemblyASM1330146v1 · Contighaploid
Genome composition3 191 192 bp · 42,5% GCCoprococcus comes
Signal transduction countsGenes 90 · HK 46 · RR 43CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusCoprococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Coprococcus
Related genes
Preview from the same derived genome key