1 Response_reg#1
74-187 aa · 114 aa · 27.3% of protein
Raw token
Response_reg:74:1.37e-25:187:115:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
G4388_RS09490
Response regulator RpfG family
Coprococcus comes · GCF_013301465
ClassRRTypeRpfGLength417 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_013301465#G4388_RS09490Stable P2CS identifier used across views.
GenomeGCF_013301465Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Coprococcus
Domain signature
Compact overview inferred from the domain field
Response_regHD
Protein length417 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage216 / 417 aa (51.8%)Merged over positioned domains only.
Domain description1 Response_reg,1 HDSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa417 aa
Domain-by-domain annotation2 items
2 HD#2
266-367 aa · 102 aa · 24.5% of protein
Raw token
HD:266:0.00000000000093:367:102:110- Raw architecture: Response_reg:74:1.37e-25:187:115:111#HD:266:0.00000000000093:367:102:110
- Domain description: 1 Response_reg,1 HD
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_013301465::NZ_JAAIOJ010000012.1::G00008
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span74782-76035Genomic interval covered by the local TCS group.
Identifiers
Old locus tagG4388_09500RefSeq proteinWP_330583637.1
Context group ID
GCF_013301465::NZ_JAAIOJ010000012.1::G00008Context members
G4388_RS09490
Partner locus tags
G4388_RS09490
Partner old locus tags
G4388_09500
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_330583637.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagG4388_RS09490Primary locus identifier stored in the genes table.
Old locus tagG4388_09500Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAAIOJ010000012.1Sequence record reported by the local genomic context database.
Genomic interval74 782-76 035 nt1 254 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span74 782-76 035 ntGCF_013301465::NZ_JAAIOJ010000012.1::G00008
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_013301465::NZ_JAAIOJ010000012.1::G00008Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAAIOJ010000012.1All displayed genes belong to this local TCS context.
Neighborhood span74 782-76 035 nt1 254 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
74 782 nt76 035 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
G4388_RS09490GCF_013301465#G4388_RS09490
RRRpfGCurrent focus
74 782-76 035 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_013299755#G4366_RS10050Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + HD_52 domains in the representative PFAM annotation.
PFAM architecture for RROC_0359012
Simplified PFAM architecture for RROC_0359012
PFAM domain coverage: 262 / 417 aa (62.8%)
1 aa417 aa
Response_regHD_5
- Simplified architecture: Response_reg + HD_5
- Raw architecture: Response_reg[74-186] | HD_5[238-386]
- Domain count: 2
- Matched identifier: RROC_0359012
- Positioned domains: Response_reg 74-186 ; HD_5 238-386
Cluster members and taxonomy
Representative gene: GCF_013299755#G4366_RS10050
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 410 072 · GCF_013301465
AssemblyASM1330146v1 · Contighaploid
Genome composition3 191 192 bp · 42,5% GCCoprococcus comes
Signal transduction countsGenes 90 · HK 46 · RR 43CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusCoprococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Coprococcus
Related genes
Preview from the same derived genome key