1 Response_reg#1
5-115 aa · 111 aa · 38.9% of protein
Raw token
Response_reg:5:5.9e-23:115:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
G4388_RS09030
Response regulator, unclassified
Coprococcus comes · GCF_013301465
ClassRRTypeunclassifiedLength285 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_013301465#G4388_RS09030Stable P2CS identifier used across views.
GenomeGCF_013301465Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Coprococcus
Domain signature
Compact overview inferred from the domain field
Response_regYcbB
Protein length285 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage231 / 285 aa (81.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 YcbBSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa285 aa
Domain-by-domain annotation2 items
2 YcbB#2
158-277 aa · 120 aa · 42.1% of protein
Raw token
YcbB:158:8.27e-44:277:131:131- Raw architecture: Response_reg:5:5.9e-23:115:111:111#YcbB:158:8.27e-44:277:131:131
- Domain description: 1 Response_reg,1 YcbB
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_013301465::NZ_JAAIOJ010000011.1::G00006
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span77297-78154Genomic interval covered by the local TCS group.
Identifiers
Old locus tagG4388_09035RefSeq proteinWP_055156096.1
Context group ID
GCF_013301465::NZ_JAAIOJ010000011.1::G00006Context members
G4388_RS09030
Partner locus tags
G4388_RS09030
Partner old locus tags
G4388_09035
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055156096.1Primary protein accession used for annex mappings.
UniProt accessionA0A174AHP6Primary UniProt accession resolved in the annex database.
UniProt IDA0A174AHP6_9FIRMDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagG4388_RS09030Primary locus identifier stored in the genes table.
Old locus tagG4388_09035Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAAIOJ010000011.1Sequence record reported by the local genomic context database.
Genomic interval77 297-78 154 nt858 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span77 297-78 154 ntGCF_013301465::NZ_JAAIOJ010000011.1::G00006
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_013301465::NZ_JAAIOJ010000011.1::G00006Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAAIOJ010000011.1All displayed genes belong to this local TCS context.
Neighborhood span77 297-78 154 nt858 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
77 297 nt78 154 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
G4388_RS09030GCF_013301465#G4388_RS09030
RRunclassifiedCurrent focus
77 297-78 154 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001404815#AQ995_RS05625Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + YcbB2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0591340
Simplified PFAM architecture for RROC_0591340
PFAM domain coverage: 227 / 285 aa (79.6%)
1 aa285 aa
Response_regYcbB
- Simplified architecture: Response_reg + YcbB
- Raw architecture: Response_reg[5-112] | YcbB[159-277]
- Domain count: 2
- Matched identifier: RROC_0591340
- Positioned domains: Response_reg 5-112 ; Response_reg 5-112 ; YcbB 159-277 ; YcbB 159-277
Cluster members and taxonomy
Representative gene: GCF_001404815#AQ995_RS05625
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 410 072 · GCF_013301465
AssemblyASM1330146v1 · Contighaploid
Genome composition3 191 192 bp · 42,5% GCCoprococcus comes
Signal transduction countsGenes 90 · HK 46 · RR 43CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusCoprococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Coprococcus
Related genes
Preview from the same derived genome key