1 HAMP#1
293-362 aa · 70 aa · 11.8% of protein
Raw token
HAMP:293:0.00000000000163:362:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
G4388_RS08905
Histidine kinase, Classic
Coprococcus comes · GCF_013301465
ClassHKTypeClassicLength593 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_013301465#G4388_RS08905Stable P2CS identifier used across views.
GenomeGCF_013301465Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Coprococcus
Domain signature
Compact overview inferred from the domain field
HAMPHis_kinaseHATPase_c
Protein length593 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage258 / 593 aa (43.5%)Merged over positioned domains only.
Domain description1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa593 aa
Domain-by-domain annotation3 items
2 His_kinase#2
377-451 aa · 75 aa · 12.6% of protein
Raw token
His_kinase:377:1.54e-34:451:75:803 HATPase_c#3
472-584 aa · 113 aa · 19.1% of protein
Raw token
HATPase_c:472:0.0000000000879:584:113:109- Raw architecture: HAMP:293:0.00000000000163:362:70:69#His_kinase:377:1.54e-34:451:75:80#HATPase_c:472:0.0000000000879:584:113:109
- Domain description: 1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_013301465::NZ_JAAIOJ010000011.1::G00005
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span46353-48134Genomic interval covered by the local TCS group.
Identifiers
Old locus tagG4388_08910RefSeq proteinWP_243863604.1
Context group ID
GCF_013301465::NZ_JAAIOJ010000011.1::G00005Context members
G4388_RS08905
Partner locus tags
G4388_RS08905
Partner old locus tags
G4388_08910
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_243863604.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagG4388_RS08905Primary locus identifier stored in the genes table.
Old locus tagG4388_08910Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAAIOJ010000011.1Sequence record reported by the local genomic context database.
Genomic interval46 353-48 134 nt1 782 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span46 353-48 134 ntGCF_013301465::NZ_JAAIOJ010000011.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_013301465::NZ_JAAIOJ010000011.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAAIOJ010000011.1All displayed genes belong to this local TCS context.
Neighborhood span46 353-48 134 nt1 782 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
46 353 nt48 134 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
G4388_RS08905GCF_013301465#G4388_RS08905
HKClassicCurrent focus
46 353-48 134 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_013299755#G4366_RS07185Use this link to inspect the representative gene detail.
PFAM architectureHAMP + His_kinase + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1095242
Simplified PFAM architecture for HKOC_1095242
PFAM domain coverage: 241 / 593 aa (40.6%)
1 aa593 aa
HAMPHis_kinaseHATPase_c
- Simplified architecture: HAMP + His_kinase + HATPase_c
- Raw architecture: HAMP[311-361] | His_kinase[378-453] | HATPase_c[472-585]
- Domain count: 3
- Matched identifier: HKOC_1095242
- Positioned domains: HAMP 311-361 ; His_kinase 378-453 ; HATPase_c 472-585
Cluster members and taxonomy
Representative gene: GCF_013299755#G4366_RS07185
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 410 072 · GCF_013301465
AssemblyASM1330146v1 · Contighaploid
Genome composition3 191 192 bp · 42,5% GCCoprococcus comes
Signal transduction countsGenes 90 · HK 46 · RR 43CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusCoprococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Coprococcus
Related genes
Preview from the same derived genome key