1 PAS_3#1
207-291 aa · 85 aa · 12.3% of protein
Raw token
PAS_3:207:3.37e-16:291:88:89P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
G4388_RS08540
Histidine kinase, Hybrid
Coprococcus comes · GCF_013301465
ClassHKTypeHybridLength690 aaTM0ValidatedNoCompleteYesContexttriad
Gene IDGCF_013301465#G4388_RS08540Stable P2CS identifier used across views.
GenomeGCF_013301465Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Coprococcus
Domain signature
Compact overview inferred from the domain field
PAS_3HisKAHATPase_cResponse_reg
Protein length690 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage382 / 690 aa (55.4%)Merged over positioned domains only.
Domain description1 PAS_3,1 HisKA,1 HATPase_c,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa690 aa
Domain-by-domain annotation4 items
2 HisKA#2
316-382 aa · 67 aa · 9.7% of protein
Raw token
HisKA:316:8.23e-16:382:67:643 HATPase_c#3
431-547 aa · 117 aa · 17.0% of protein
Raw token
HATPase_c:431:8.74e-28:547:117:1094 Response_reg#4
570-682 aa · 113 aa · 16.4% of protein
Raw token
Response_reg:570:1.16e-27:682:113:111- Raw architecture: PAS_3:207:3.37e-16:291:88:89#HisKA:316:8.23e-16:382:67:64#HATPase_c:431:8.74e-28:547:117:109#Response_reg:570:1.16e-27:682:113:111
- Domain description: 1 PAS_3,1 HisKA,1 HATPase_c,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labeltriadGCF_013301465::NZ_JAAIOJ010000010.1::G00003
Group size33 locus tags listed below.
HK / RR2 / 1Counts resolved for the local TCS neighborhood.
Context span60831-67712Genomic interval covered by the local TCS group.
Identifiers
Old locus tagG4388_08540RefSeq proteinWP_173690400.1
Context group ID
GCF_013301465::NZ_JAAIOJ010000010.1::G00003Context members
G4388_RS08540G4388_RS08545G4388_RS08555
Partner locus tags
G4388_RS08540G4388_RS08545G4388_RS08555
Partner old locus tags
G4388_08540G4388_08545G4388_08555
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_173690400.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagG4388_RS08540Primary locus identifier stored in the genes table.
Old locus tagG4388_08540Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAAIOJ010000010.1Sequence record reported by the local genomic context database.
Genomic interval60 831-62 903 nt2 073 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span60 831-67 712 ntGCF_013301465::NZ_JAAIOJ010000010.1::G00003
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_013301465::NZ_JAAIOJ010000010.1::G00003Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labeltriadNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAAIOJ010000010.1All displayed genes belong to this local TCS context.
Neighborhood span60 831-67 712 nt6 882 nt
Members31 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
60 831 nt67 712 nt
Neighborhood gene cards
3 genes in the current local neighborhood.
G4388_RS08540GCF_013301465#G4388_RS08540
HKHybridCurrent focus
60 831-62 903 nt · Reverse (-)
G4388_RS08545GCF_013301465#G4388_RS08545
HKHybrid
62 999-65 857 nt · Reverse (-)
G4388_RS08555GCF_013301465#G4388_RS08555
RRRpfG
66 222-67 712 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_013299755#G4366_RS09505Use this link to inspect the representative gene detail.
PFAM architecturePAS_3 + HisKA + HATPase_c + Response_reg4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0792215
Simplified PFAM architecture for HKOC_0792215
PFAM domain coverage: 382 / 690 aa (55.4%)
1 aa690 aa
PAS_3HisKAHATPase_cResponse_reg
- Simplified architecture: PAS_3 + HisKA + HATPase_c + Response_reg
- Raw architecture: PAS_3[207-291] | HisKA[316-382] | HATPase_c[432-547] | Response_reg[570-683]
- Domain count: 4
- Matched identifier: HKOC_0792215
- Positioned domains: PAS_3 207-291 ; HisKA 316-382 ; HATPase_c 432-547 ; Response_reg 570-683
Cluster members and taxonomy
Representative gene: GCF_013299755#G4366_RS09505
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 410 072 · GCF_013301465
AssemblyASM1330146v1 · Contighaploid
Genome composition3 191 192 bp · 42,5% GCCoprococcus comes
Signal transduction countsGenes 90 · HK 46 · RR 43CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusCoprococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Coprococcus
Related genes
Preview from the same derived genome key