1 HisKA#1
255-320 aa · 66 aa · 10.5% of protein
Raw token
HisKA:255:4.01e-19:320:66:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
G4388_RS08500
Histidine kinase, Hybrid
Coprococcus comes · GCF_013301465
ClassHKTypeHybridLength628 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_013301465#G4388_RS08500Stable P2CS identifier used across views.
GenomeGCF_013301465Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Coprococcus
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_cResponse_reg
Protein length628 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage300 / 628 aa (47.8%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_c,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa628 aa
Domain-by-domain annotation3 items
2 HATPase_c#2
367-483 aa · 117 aa · 18.6% of protein
Raw token
HATPase_c:367:3.24e-30:483:118:1093 Response_reg#3
507-623 aa · 117 aa · 18.6% of protein
Raw token
Response_reg:507:2.68e-28:623:117:111- Raw architecture: HisKA:255:4.01e-19:320:66:64#HATPase_c:367:3.24e-30:483:118:109#Response_reg:507:2.68e-28:623:117:111
- Domain description: 1 HisKA,1 HATPase_c,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_013301465::NZ_JAAIOJ010000010.1::G00001
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span46542-48428Genomic interval covered by the local TCS group.
Identifiers
Old locus tagG4388_08500RefSeq proteinWP_173690406.1
Context group ID
GCF_013301465::NZ_JAAIOJ010000010.1::G00001Context members
G4388_RS08500
Partner locus tags
G4388_RS08500
Partner old locus tags
G4388_08500
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_173690406.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagG4388_RS08500Primary locus identifier stored in the genes table.
Old locus tagG4388_08500Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAAIOJ010000010.1Sequence record reported by the local genomic context database.
Genomic interval46 542-48 428 nt1 887 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span46 542-48 428 ntGCF_013301465::NZ_JAAIOJ010000010.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_013301465::NZ_JAAIOJ010000010.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAAIOJ010000010.1All displayed genes belong to this local TCS context.
Neighborhood span46 542-48 428 nt1 887 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
46 542 nt48 428 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
G4388_RS08500GCF_013301465#G4388_RS08500
HKHybridCurrent focus
46 542-48 428 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_013299755#G4366_RS09465Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c + Response_reg3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0953744
Simplified PFAM architecture for HKOC_0953744
PFAM domain coverage: 299 / 628 aa (47.6%)
1 aa628 aa
HisKAHATPase_cResponse_reg
- Simplified architecture: HisKA + HATPase_c + Response_reg
- Raw architecture: HisKA[255-320] | HATPase_c[367-482] | Response_reg[507-623]
- Domain count: 3
- Matched identifier: HKOC_0953744
- Positioned domains: HisKA 255-320 ; HATPase_c 367-482 ; Response_reg 507-623
Cluster members and taxonomy
Representative gene: GCF_013299755#G4366_RS09465
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 410 072 · GCF_013301465
AssemblyASM1330146v1 · Contighaploid
Genome composition3 191 192 bp · 42,5% GCCoprococcus comes
Signal transduction countsGenes 90 · HK 46 · RR 43CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusCoprococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Coprococcus
Related genes
Preview from the same derived genome key