1 HisKA#1
127-193 aa · 67 aa · 18.9% of protein
Raw token
HisKA:127:0.0000000000000114:193:67:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
G4388_RS07530
Histidine kinase, Classic
Coprococcus comes · GCF_013301465
ClassHKTypeClassicLength355 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_013301465#G4388_RS07530Stable P2CS identifier used across views.
GenomeGCF_013301465Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Coprococcus
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length355 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage179 / 355 aa (50.4%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa355 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
238-349 aa · 112 aa · 31.5% of protein
Raw token
HATPase_c:238:2.2e-27:349:112:109- Raw architecture: HisKA:127:0.0000000000000114:193:67:64#HATPase_c:238:2.2e-27:349:112:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_013301465::NZ_JAAIOJ010000008.1::G00050
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span69265-71023Genomic interval covered by the local TCS group.
Identifiers
Old locus tagG4388_07530RefSeq proteinWP_227084649.1
Context group ID
GCF_013301465::NZ_JAAIOJ010000008.1::G00050Context members
G4388_RS07525G4388_RS07530
Partner locus tags
G4388_RS07525G4388_RS07530
Partner old locus tags
G4388_07525G4388_07530
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_227084649.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagG4388_RS07530Primary locus identifier stored in the genes table.
Old locus tagG4388_07530Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAAIOJ010000008.1Sequence record reported by the local genomic context database.
Genomic interval69 956-71 023 nt1 068 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span69 265-71 023 ntGCF_013301465::NZ_JAAIOJ010000008.1::G00050
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_013301465::NZ_JAAIOJ010000008.1::G00050Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAAIOJ010000008.1All displayed genes belong to this local TCS context.
Neighborhood span69 265-71 023 nt1 759 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
69 265 nt71 023 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
G4388_RS07525GCF_013301465#G4388_RS07525
RROmpR
69 265-69 966 nt · Reverse (-)
G4388_RS07530GCF_013301465#G4388_RS07530
HKClassicCurrent focus
69 956-71 023 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003460315#DWX03_RS10575Use this link to inspect the representative gene detail.
PFAM architectureDUF4118 + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2776133
Simplified PFAM architecture for HKOC_2776133
PFAM domain coverage: 282 / 355 aa (79.4%)
1 aa355 aa
DUF4118HisKAHATPase_c
- Simplified architecture: DUF4118 + HisKA + HATPase_c
- Raw architecture: DUF4118[12-116] | HisKA[127-193] | HATPase_c[239-348]
- Domain count: 3
- Matched identifier: HKOC_2776133
- Positioned domains: DUF4118 12-116 ; HisKA 127-193 ; HATPase_c 239-348
Cluster members and taxonomy
Representative gene: GCF_003460315#DWX03_RS10575
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 410 072 · GCF_013301465
AssemblyASM1330146v1 · Contighaploid
Genome composition3 191 192 bp · 42,5% GCCoprococcus comes
Signal transduction countsGenes 90 · HK 46 · RR 43CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusCoprococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Coprococcus
Related genes
Preview from the same derived genome key