1 HAMP#1
201-268 aa · 68 aa · 13.7% of protein
Raw token
HAMP:201:0.0000000000000678:268:68:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
G4388_RS04505
Histidine kinase, Classic
Coprococcus comes · GCF_013301465
ClassHKTypeClassicLength495 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_013301465#G4388_RS04505Stable P2CS identifier used across views.
GenomeGCF_013301465Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Coprococcus
Domain signature
Compact overview inferred from the domain field
HAMPHis_kinaseHATPase_c
Protein length495 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage250 / 495 aa (50.5%)Merged over positioned domains only.
Domain description1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa495 aa
Domain-by-domain annotation3 items
2 His_kinase#2
286-364 aa · 79 aa · 16.0% of protein
Raw token
His_kinase:286:2.81e-33:364:79:803 HATPase_c#3
384-486 aa · 103 aa · 20.8% of protein
Raw token
HATPase_c:384:0.00000000000232:486:104:109- Raw architecture: HAMP:201:0.0000000000000678:268:68:69#His_kinase:286:2.81e-33:364:79:80#HATPase_c:384:0.00000000000232:486:104:109
- Domain description: 1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_013301465::NZ_JAAIOJ010000004.1::G00045
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span113677-116784Genomic interval covered by the local TCS group.
Identifiers
Old locus tagG4388_04515RefSeq proteinWP_243863506.1
Context group ID
GCF_013301465::NZ_JAAIOJ010000004.1::G00045Context members
G4388_RS04500G4388_RS04505
Partner locus tags
G4388_RS04500G4388_RS04505
Partner old locus tags
G4388_04510G4388_04515
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_243863506.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagG4388_RS04505Primary locus identifier stored in the genes table.
Old locus tagG4388_04515Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAAIOJ010000004.1Sequence record reported by the local genomic context database.
Genomic interval115 297-116 784 nt1 488 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span113 677-116 784 ntGCF_013301465::NZ_JAAIOJ010000004.1::G00045
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_013301465::NZ_JAAIOJ010000004.1::G00045Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAAIOJ010000004.1All displayed genes belong to this local TCS context.
Neighborhood span113 677-116 784 nt3 108 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
113 677 nt116 784 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
G4388_RS04500GCF_013301465#G4388_RS04500
RRunclassified
113 677-115 293 nt · Forward (+)
G4388_RS04505GCF_013301465#G4388_RS04505
HKClassicCurrent focus
115 297-116 784 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_013299755#G4366_RS04790Use this link to inspect the representative gene detail.
PFAM architectureHAMP + His_kinase + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1506160
Simplified PFAM architecture for HKOC_1506160
PFAM domain coverage: 230 / 495 aa (46.5%)
1 aa495 aa
HAMPHis_kinaseHATPase_c
- Simplified architecture: HAMP + His_kinase + HATPase_c
- Raw architecture: HAMP[219-268] | His_kinase[286-362] | HATPase_c[384-486]
- Domain count: 3
- Matched identifier: HKOC_1506160
- Positioned domains: HAMP 219-268 ; His_kinase 286-362 ; HATPase_c 384-486
Cluster members and taxonomy
Representative gene: GCF_013299755#G4366_RS04790
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 410 072 · GCF_013301465
AssemblyASM1330146v1 · Contighaploid
Genome composition3 191 192 bp · 42,5% GCCoprococcus comes
Signal transduction countsGenes 90 · HK 46 · RR 43CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusCoprococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Coprococcus
Related genes
Preview from the same derived genome key