1 Response_reg#1
3-111 aa · 109 aa · 47.6% of protein
Raw token
Response_reg:3:2.42e-33:111:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
G4388_RS03850
Response regulator OmpR family
Coprococcus comes · GCF_013301465
ClassRRTypeOmpRLength229 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_013301465#G4388_RS03850Stable P2CS identifier used across views.
GenomeGCF_013301465Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Coprococcus
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length229 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage186 / 229 aa (81.2%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa229 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
151-227 aa · 77 aa · 33.6% of protein
Raw token
Trans_reg_C:151:4.67e-31:227:77:77- Raw architecture: Response_reg:3:2.42e-33:111:111:111#Trans_reg_C:151:4.67e-31:227:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_013301465::NZ_JAAIOJ010000003.1::G00041
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span231535-233443Genomic interval covered by the local TCS group.
Identifiers
Old locus tagG4388_03865RefSeq proteinWP_008371692.1
Context group ID
GCF_013301465::NZ_JAAIOJ010000003.1::G00041Context members
G4388_RS03845G4388_RS03850
Partner locus tags
G4388_RS03845G4388_RS03850
Partner old locus tags
G4388_03860G4388_03865
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_008371692.1Primary protein accession used for annex mappings.
UniProt accessionC0B4V3Primary UniProt accession resolved in the annex database.
UniProt IDC0B4V3_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagG4388_RS03850Primary locus identifier stored in the genes table.
Old locus tagG4388_03865Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAAIOJ010000003.1Sequence record reported by the local genomic context database.
Genomic interval232 754-233 443 nt690 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span231 535-233 443 ntGCF_013301465::NZ_JAAIOJ010000003.1::G00041
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_013301465::NZ_JAAIOJ010000003.1::G00041Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAAIOJ010000003.1All displayed genes belong to this local TCS context.
Neighborhood span231 535-233 443 nt1 909 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
231 535 nt233 443 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
G4388_RS03845GCF_013301465#G4388_RS03845
HKClassic
231 535-232 764 nt · Reverse (-)
G4388_RS03850GCF_013301465#G4388_RS03850
RROmpRCurrent focus
232 754-233 443 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001404595#AQ998_RS14450Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1253440
Simplified PFAM architecture for RROC_1253440
PFAM domain coverage: 185 / 229 aa (80.8%)
1 aa229 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[3-111] | Trans_reg_C[151-226]
- Domain count: 2
- Matched identifier: RROC_1253440
- Positioned domains: Response_reg 3-111 ; Response_reg 3-111 ; Trans_reg_C 151-226 ; Trans_reg_C 151-226
Cluster members and taxonomy
Representative gene: GCF_001404595#AQ998_RS14450
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 410 072 · GCF_013301465
AssemblyASM1330146v1 · Contighaploid
Genome composition3 191 192 bp · 42,5% GCCoprococcus comes
Signal transduction countsGenes 90 · HK 46 · RR 43CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusCoprococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Coprococcus
Related genes
Preview from the same derived genome key