1 HisKA#1
151-211 aa · 61 aa · 14.9% of protein
Raw token
HisKA:151:0.0000000219:211:61:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
G4388_RS03845
Histidine kinase, Classic
Coprococcus comes · GCF_013301465
ClassHKTypeClassicLength409 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_013301465#G4388_RS03845Stable P2CS identifier used across views.
GenomeGCF_013301465Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Coprococcus
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length409 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage172 / 409 aa (42.1%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa409 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
263-373 aa · 111 aa · 27.1% of protein
Raw token
HATPase_c:263:5.88e-25:373:112:109- Raw architecture: HisKA:151:0.0000000219:211:61:64#HATPase_c:263:5.88e-25:373:112:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_013301465::NZ_JAAIOJ010000003.1::G00041
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span231535-233443Genomic interval covered by the local TCS group.
Identifiers
Old locus tagG4388_03860RefSeq proteinWP_173690080.1
Context group ID
GCF_013301465::NZ_JAAIOJ010000003.1::G00041Context members
G4388_RS03845G4388_RS03850
Partner locus tags
G4388_RS03845G4388_RS03850
Partner old locus tags
G4388_03860G4388_03865
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_173690080.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagG4388_RS03845Primary locus identifier stored in the genes table.
Old locus tagG4388_03860Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAAIOJ010000003.1Sequence record reported by the local genomic context database.
Genomic interval231 535-232 764 nt1 230 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span231 535-233 443 ntGCF_013301465::NZ_JAAIOJ010000003.1::G00041
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_013301465::NZ_JAAIOJ010000003.1::G00041Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAAIOJ010000003.1All displayed genes belong to this local TCS context.
Neighborhood span231 535-233 443 nt1 909 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
231 535 nt233 443 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
G4388_RS03845GCF_013301465#G4388_RS03845
HKClassicCurrent focus
231 535-232 764 nt · Reverse (-)
G4388_RS03850GCF_013301465#G4388_RS03850
RROmpR
232 754-233 443 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_013299755#G4366_RS04130Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2364785
Simplified PFAM architecture for HKOC_2364785
PFAM domain coverage: 170 / 409 aa (41.6%)
1 aa409 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[152-210] | HATPase_c[263-373]
- Domain count: 2
- Matched identifier: HKOC_2364785
- Positioned domains: HisKA 152-210 ; HATPase_c 263-373
Cluster members and taxonomy
Representative gene: GCF_013299755#G4366_RS04130
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 410 072 · GCF_013301465
AssemblyASM1330146v1 · Contighaploid
Genome composition3 191 192 bp · 42,5% GCCoprococcus comes
Signal transduction countsGenes 90 · HK 46 · RR 43CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusCoprococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Coprococcus
Related genes
Preview from the same derived genome key