1 Response_reg#1
4-113 aa · 110 aa · 48.0% of protein
Raw token
Response_reg:4:6.48e-29:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
G4388_RS03260
Response regulator OmpR family
Coprococcus comes · GCF_013301465
ClassRRTypeOmpRLength229 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_013301465#G4388_RS03260Stable P2CS identifier used across views.
GenomeGCF_013301465Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Coprococcus
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length229 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage185 / 229 aa (80.8%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa229 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
147-221 aa · 75 aa · 32.8% of protein
Raw token
Trans_reg_C:147:1.25e-29:221:75:77- Raw architecture: Response_reg:4:6.48e-29:113:111:111#Trans_reg_C:147:1.25e-29:221:75:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_013301465::NZ_JAAIOJ010000003.1::G00039
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span100000-101930Genomic interval covered by the local TCS group.
Identifiers
Old locus tagG4388_03270RefSeq proteinWP_008120506.1
Context group ID
GCF_013301465::NZ_JAAIOJ010000003.1::G00039Context members
G4388_RS03255G4388_RS03260
Partner locus tags
G4388_RS03255G4388_RS03260
Partner old locus tags
G4388_03265G4388_03270
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_008120506.1Primary protein accession used for annex mappings.
UniProt accessionA0ABW8B078Primary UniProt accession resolved in the annex database.
UniProt IDA0ABW8B078_9FIRMDisplay identifier provided by UniProt.
GO / PubMed0 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagG4388_RS03260Primary locus identifier stored in the genes table.
Old locus tagG4388_03270Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAAIOJ010000003.1Sequence record reported by the local genomic context database.
Genomic interval101 241-101 930 nt690 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span100 000-101 930 ntGCF_013301465::NZ_JAAIOJ010000003.1::G00039
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_013301465::NZ_JAAIOJ010000003.1::G00039Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAAIOJ010000003.1All displayed genes belong to this local TCS context.
Neighborhood span100 000-101 930 nt1 931 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
100 000 nt101 930 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
G4388_RS03255GCF_013301465#G4388_RS03255
HKClassic
100 000-101 265 nt · Reverse (-)
G4388_RS03260GCF_013301465#G4388_RS03260
RROmpRCurrent focus
101 241-101 930 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000210035#RTO_RS06375Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1247373
Simplified PFAM architecture for RROC_1247373
PFAM domain coverage: 185 / 229 aa (80.8%)
1 aa229 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-112] | Trans_reg_C[147-222]
- Domain count: 2
- Matched identifier: RROC_1247373
- Positioned domains: Response_reg 4-112 ; Response_reg 4-112 ; Trans_reg_C 147-222 ; Trans_reg_C 147-222
Cluster members and taxonomy
Representative gene: GCF_000210035#RTO_RS06375
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 410 072 · GCF_013301465
AssemblyASM1330146v1 · Contighaploid
Genome composition3 191 192 bp · 42,5% GCCoprococcus comes
Signal transduction countsGenes 90 · HK 46 · RR 43CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusCoprococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Coprococcus
Related genes
Preview from the same derived genome key