1 Response_reg#1
4-108 aa · 105 aa · 44.5% of protein
Raw token
Response_reg:4:4.55e-19:108:108:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
G4470_RS17685
Response regulator LytTR family
Blautia faecis · GCF_013300155
ClassRRTypeLytTRLength236 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_013300155#G4470_RS17685Stable P2CS identifier used across views.
GenomeGCF_013300155Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length236 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage192 / 236 aa (81.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa236 aa
Domain-by-domain annotation2 items
2 LytTR#2
141-227 aa · 87 aa · 36.9% of protein
Raw token
LytTR:141:0.00000000000000205:227:93:98- Raw architecture: Response_reg:4:4.55e-19:108:108:111#LytTR:141:0.00000000000000205:227:93:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_013300155::NZ_JAAINN010000067.1::G00058
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span5249-5959Genomic interval covered by the local TCS group.
Identifiers
Old locus tagG4470_17705RefSeq proteinWP_173717516.1
Context group ID
GCF_013300155::NZ_JAAINN010000067.1::G00058Context members
G4470_RS17685
Partner locus tags
G4470_RS17685
Partner old locus tags
G4470_17705
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_173717516.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagG4470_RS17685Primary locus identifier stored in the genes table.
Old locus tagG4470_17705Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAAINN010000067.1Sequence record reported by the local genomic context database.
Genomic interval5 249-5 959 nt711 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span5 249-5 959 ntGCF_013300155::NZ_JAAINN010000067.1::G00058
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_013300155::NZ_JAAINN010000067.1::G00058Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAAINN010000067.1All displayed genes belong to this local TCS context.
Neighborhood span5 249-5 959 nt711 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
5 249 nt5 959 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
G4470_RS17685GCF_013300155#G4470_RS17685
RRLytTRCurrent focus
5 249-5 959 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_013300155#G4470_RS17685The current gene is the representative for this cluster.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0999166
Simplified PFAM architecture for RROC_0999166
PFAM domain coverage: 192 / 236 aa (81.4%)
1 aa236 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[4-108] | LytTR[141-227]
- Domain count: 2
- Matched identifier: RROC_0999166
- Positioned domains: Response_reg 4-108 ; LytTR 141-227
Cluster members and taxonomy
Representative gene: GCF_013300155#G4470_RS17685
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 871 665 · GCF_013300155
AssemblyASM1330015v1 · Contighaploid
Genome composition4 109 988 bp · 43,0% GCBlautia faecis
Signal transduction countsGenes 122 · HK 62 · RR 59CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key