1 Response_reg#1
5-117 aa · 113 aa · 21.0% of protein
Raw token
Response_reg:5:6.61e-29:117:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
G4470_RS02345
Response regulator, unclassified
Blautia faecis · GCF_013300155
ClassRRTypeunclassifiedLength537 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_013300155#G4470_RS02345Stable P2CS identifier used across views.
GenomeGCF_013300155Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length537 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage186 / 537 aa (34.6%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa537 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
444-485 aa · 42 aa · 7.8% of protein
Raw token
HTH_AraC:444:0.000000288:485:42:423 HTH_AraC#3
505-535 aa · 31 aa · 5.8% of protein
Raw token
HTH_AraC:505:0.00000155:535:31:42- Raw architecture: Response_reg:5:6.61e-29:117:113:111#HTH_AraC:444:0.000000288:485:42:42#HTH_AraC:505:0.00000155:535:31:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_013300155::NZ_JAAINN010000003.1::G00036
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span79421-82811Genomic interval covered by the local TCS group.
Identifiers
Old locus tagG4470_02345RefSeq proteinWP_118577628.1
Context group ID
GCF_013300155::NZ_JAAINN010000003.1::G00036Context members
G4470_RS02340G4470_RS02345
Partner locus tags
G4470_RS02340G4470_RS02345
Partner old locus tags
G4470_02340G4470_02345
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_118577628.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagG4470_RS02345Primary locus identifier stored in the genes table.
Old locus tagG4470_02345Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAAINN010000003.1Sequence record reported by the local genomic context database.
Genomic interval81 198-82 811 nt1 614 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span79 421-82 811 ntGCF_013300155::NZ_JAAINN010000003.1::G00036
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_013300155::NZ_JAAINN010000003.1::G00036Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAAINN010000003.1All displayed genes belong to this local TCS context.
Neighborhood span79 421-82 811 nt3 391 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
79 421 nt82 811 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
G4470_RS02340GCF_013300155#G4470_RS02340
HKClassic
79 421-81 226 nt · Forward (+)
G4470_RS02345GCF_013300155#G4470_RS02345
RRunclassifiedCurrent focus
81 198-82 811 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003480145#DW904_RS00520Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0096725
Simplified PFAM architecture for RROC_0096725
PFAM domain coverage: 190 / 537 aa (35.4%)
1 aa537 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[5-115] | HTH_18[457-535]
- Domain count: 2
- Matched identifier: RROC_0096725
- Positioned domains: Response_reg 5-115 ; Response_reg 5-115 ; HTH_18 457-535 ; HTH_18 457-535
Cluster members and taxonomy
Representative gene: GCF_003480145#DW904_RS00520
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 871 665 · GCF_013300155
AssemblyASM1330015v1 · Contighaploid
Genome composition4 109 988 bp · 43,0% GCBlautia faecis
Signal transduction countsGenes 122 · HK 62 · RR 59CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key