1 Response_reg#1
3-117 aa · 115 aa · 49.1% of protein
Raw token
Response_reg:3:0.000000000000112:117:117:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
G4470_RS00165
Response regulator LytTR family
Blautia faecis · GCF_013300155
ClassRRTypeLytTRLength234 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_013300155#G4470_RS00165Stable P2CS identifier used across views.
GenomeGCF_013300155Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length234 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage204 / 234 aa (87.2%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa234 aa
Domain-by-domain annotation2 items
2 LytTR#2
138-226 aa · 89 aa · 38.0% of protein
Raw token
LytTR:138:0.00000000259:226:95:98- Raw architecture: Response_reg:3:0.000000000000112:117:117:111#LytTR:138:0.00000000259:226:95:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_013300155::NZ_JAAINN010000001.1::G00012
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span38085-38789Genomic interval covered by the local TCS group.
Identifiers
Old locus tagG4470_00165RefSeq proteinWP_173715488.1
Context group ID
GCF_013300155::NZ_JAAINN010000001.1::G00012Context members
G4470_RS00165
Partner locus tags
G4470_RS00165
Partner old locus tags
G4470_00165
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_173715488.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagG4470_RS00165Primary locus identifier stored in the genes table.
Old locus tagG4470_00165Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAAINN010000001.1Sequence record reported by the local genomic context database.
Genomic interval38 085-38 789 nt705 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span38 085-38 789 ntGCF_013300155::NZ_JAAINN010000001.1::G00012
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_013300155::NZ_JAAINN010000001.1::G00012Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAAINN010000001.1All displayed genes belong to this local TCS context.
Neighborhood span38 085-38 789 nt705 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
38 085 nt38 789 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
G4470_RS00165GCF_013300155#G4470_RS00165
RRLytTRCurrent focus
38 085-38 789 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_013300155#G4470_RS00165The current gene is the representative for this cluster.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1059740
Simplified PFAM architecture for RROC_1059740
PFAM domain coverage: 202 / 234 aa (86.3%)
1 aa234 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[3-116] | LytTR[138-225]
- Domain count: 2
- Matched identifier: RROC_1059740
- Positioned domains: Response_reg 3-116 ; LytTR 138-225
Cluster members and taxonomy
Representative gene: GCF_013300155#G4470_RS00165
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 871 665 · GCF_013300155
AssemblyASM1330015v1 · Contighaploid
Genome composition4 109 988 bp · 43,0% GCBlautia faecis
Signal transduction countsGenes 122 · HK 62 · RR 59CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key