1 dCache_1#1
74-297 aa · 224 aa · 35.4% of protein
Raw token
dCache_1:74:0.00000751:297:228:195P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
G4470_RS01725
Histidine kinase, Classic
Blautia faecis · GCF_013300155
ClassHKTypeClassicLength633 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_013300155#G4470_RS01725Stable P2CS identifier used across views.
GenomeGCF_013300155Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
dCache_1HAMPHis_kinaseHATPase_c
Protein length633 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage472 / 633 aa (74.6%)Merged over positioned domains only.
Domain description1 dCache_1,1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa633 aa
Domain-by-domain annotation4 items
2 HAMP#2
315-381 aa · 67 aa · 10.6% of protein
Raw token
HAMP:315:0.000000000042:381:67:693 His_kinase#3
397-475 aa · 79 aa · 12.5% of protein
Raw token
His_kinase:397:1.73e-27:475:79:804 HATPase_c#4
493-594 aa · 102 aa · 16.1% of protein
Raw token
HATPase_c:493:0.000000000000691:594:111:109- Raw architecture: dCache_1:74:0.00000751:297:228:195#HAMP:315:0.000000000042:381:67:69#His_kinase:397:1.73e-27:475:79:80#HATPase_c:493:0.000000000000691:594:111:109
- Domain description: 1 dCache_1,1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_013300155::NZ_JAAINN010000002.1::G00028
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span137619-140955Genomic interval covered by the local TCS group.
Identifiers
Old locus tagG4470_01720RefSeq proteinWP_226840940.1
Context group ID
GCF_013300155::NZ_JAAINN010000002.1::G00028Context members
G4470_RS01725G4470_RS01730
Partner locus tags
G4470_RS01725G4470_RS01730
Partner old locus tags
G4470_01720G4470_01725
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_226840940.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagG4470_RS01725Primary locus identifier stored in the genes table.
Old locus tagG4470_01720Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAAINN010000002.1Sequence record reported by the local genomic context database.
Genomic interval137 619-139 520 nt1 902 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span137 619-140 955 ntGCF_013300155::NZ_JAAINN010000002.1::G00028
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_013300155::NZ_JAAINN010000002.1::G00028Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAAINN010000002.1All displayed genes belong to this local TCS context.
Neighborhood span137 619-140 955 nt3 337 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
137 619 nt140 955 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
G4470_RS01725GCF_013300155#G4470_RS01725
HKClassicCurrent focus
137 619-139 520 nt · Reverse (-)
G4470_RS01730GCF_013300155#G4470_RS01730
RRunclassified
139 411-140 955 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_013300155#G4470_RS01725The current gene is the representative for this cluster.
PFAM architectureHAMP + His_kinase + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0940206
Simplified PFAM architecture for HKOC_0940206
PFAM domain coverage: 226 / 633 aa (35.7%)
1 aa633 aa
HAMPHis_kinaseHATPase_c
- Simplified architecture: HAMP + His_kinase + HATPase_c
- Raw architecture: HAMP[330-380] | His_kinase[397-472] | HATPase_c[495-593]
- Domain count: 3
- Matched identifier: HKOC_0940206
- Positioned domains: HAMP 330-380 ; His_kinase 397-472 ; HATPase_c 495-593
Cluster members and taxonomy
Representative gene: GCF_013300155#G4470_RS01725
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 871 665 · GCF_013300155
AssemblyASM1330015v1 · Contighaploid
Genome composition4 109 988 bp · 43,0% GCBlautia faecis
Signal transduction countsGenes 122 · HK 62 · RR 59CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key